Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3f08
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin c-t... 129 2e-30
AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin c-t... 128 5e-30
AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin c-t... 125 3e-29
Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical pr... 63 2e-10
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p... 32 0.44
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr... 32 0.44
U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical p... 31 0.58
AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical ... 29 3.1
AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical ... 29 3.1
AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical ... 29 3.1
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 29 4.1
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 29 4.1
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 28 5.4
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 28 5.4
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 28 5.4
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81543-5|CAB04427.2| 507|Caenorhabditis elegans Hypothetical pr... 27 9.5
AC006641-1|AAF39824.2| 376|Caenorhabditis elegans Hypothetical ... 27 9.5
>AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 3 protein.
Length = 227
Score = 129 bits (312), Expect = 2e-30
Identities = 73/182 (40%), Positives = 107/182 (58%), Gaps = 2/182 (1%)
Frame = +1
Query: 145 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 324
LESNP+ +N FL+K+G+ VDV D E L +VP P L+++L FP ++A E K
Sbjct: 12 LESNPETINPFLKKIGITGL-ECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREFLSKQ 70
Query: 325 EENEILSKGQEVSGNIFYMKQN--ISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 498
E E+ G++ G +F+M Q+ I NACGT AL HS+AN + + L G K+ +AK
Sbjct: 71 YE-EVEKNGEKPEG-VFFMNQSEEIGNACGTFALFHSLANLENRVNLGKGKFAKWYEKAK 128
Query: 499 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRK 678
++ R LL + AH+E A+EG+T D V++HFI++V K+G LYE+D
Sbjct: 129 LVNEDERSDLLSGDTDLAEAHEETAEEGET---EQSDHVDYHFITYVNKNGQLYEIDSCA 185
Query: 679 AF 684
F
Sbjct: 186 PF 187
>AF125955-1|AAD14718.1| 216|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 1 protein.
Length = 216
Score = 128 bits (308), Expect = 5e-30
Identities = 76/183 (41%), Positives = 103/183 (56%), Gaps = 2/183 (1%)
Frame = +1
Query: 142 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 321
PLESNP V+N ++K+GV VDV+ D E++ +P +V+L FP +KK
Sbjct: 7 PLESNPSVINPMIEKMGVSGV-KTVDVLFFDDESIG---KPQHAVILCFP------EYKK 56
Query: 322 TEE--NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEA 495
+E I + + ++F+MKQ ISNACGT AL HS+AN D I L DG K+L EA
Sbjct: 57 VDEIMKPIYEQAKAADDSVFFMKQKISNACGTFALFHSLANLEDRINLGDGSFAKWLAEA 116
Query: 496 KGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGR 675
K + R L + + H A +GQT PS + V HHFI FV K+G LYE+D R
Sbjct: 117 KKVGIEERSDFLANNAELAGIHAAAATDGQT-APSGD--VEHHFICFVGKNGILYEIDSR 173
Query: 676 KAF 684
+ F
Sbjct: 174 RPF 176
>AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 2 protein.
Length = 249
Score = 125 bits (301), Expect = 3e-29
Identities = 72/182 (39%), Positives = 104/182 (57%), Gaps = 2/182 (1%)
Frame = +1
Query: 145 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 324
LESNP+ +N FL K+GV VDV D E L ++P P L+++L FP S E K
Sbjct: 11 LESNPETINPFLSKIGVSGV-ECVDVFSFDDEMLQFIPTPQLALILCFPSSGVREFRAKQ 69
Query: 325 EENEILSKGQEVSGNIFYM--KQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAK 498
E E+ G++ G IF+M K+ I +ACGT +L HS+AN + + L +G K+ +AK
Sbjct: 70 YE-EVEKNGKKPDG-IFFMNQKKEIGHACGTFSLFHSLANLENRVNLGNGKFSKWFEKAK 127
Query: 499 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRK 678
+ R LL + AHKE A+EG+T P + V +HFI++V K+G L+E+D
Sbjct: 128 LVGEGERSDLLLADTDLAEAHKETAEEGETEHP---EHVAYHFITYVNKNGQLFEIDSCS 184
Query: 679 AF 684
F
Sbjct: 185 PF 186
>Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical
protein C08B11.7 protein.
Length = 321
Score = 62.9 bits (146), Expect = 2e-10
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 2/178 (1%)
Frame = +1
Query: 145 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 324
+ES+P V + L+ GV + ++ LD + + RP ++ LF ++
Sbjct: 10 IESDPGVFTEMLRGFGVDGL-QVEELYSLDDDKA--MTRPTYGLIFLF-------KWRQG 59
Query: 325 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 504
+E + ++ NIF+ Q I NAC T AL++ + N D + ++ A L
Sbjct: 60 DETTGIPSDKQ---NIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDL 116
Query: 505 DATARGKLLEKSEGIINAHKELAQEG--QTNTPSAEDPVNHHFISFVQKDGALYELDG 672
D RG L SE I H +++ + + E N+HF+++V +YELDG
Sbjct: 117 DPNTRGHCLSNSEEIRTVHNSFSRQTLFELDIKGGESEDNYHFVTYVPIGNKVYELDG 174
>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
protein F36H1.2c protein.
Length = 1427
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 457 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 603
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1051 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1099
>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
F36H1.2b protein.
Length = 1379
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 457 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 603
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
F36H1.2a protein.
Length = 1398
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 457 LSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSA 603
L+ GH++KF+ LD R + E+S+G+++ ++ G P+A
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRERSKGLVDIEAQVGSAGMAIPPNA 1070
>U88308-10|AAB42326.2| 268|Caenorhabditis elegans Hypothetical
protein C32E8.9 protein.
Length = 268
Score = 31.5 bits (68), Expect = 0.58
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +1
Query: 430 VANNTDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED 609
+ ++TDI G F G+ + G E EGI+ + LA G+ N SAE+
Sbjct: 135 ICSSTDIRIAHSGSKIAFFQSKMGIVPSWGGA--EYMEGIMGRGRALAAMGRANVMSAEE 192
Query: 610 PVNHHFISFVQK 645
+ ++ +V K
Sbjct: 193 AKDQGYVDYVYK 204
>AF099002-3|AAO91691.1| 570|Caenorhabditis elegans Hypothetical
protein Y71H10B.1c protein.
Length = 570
Score = 29.1 bits (62), Expect = 3.1
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +1
Query: 298 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 465
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 316 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 373
Query: 466 --GHMQKFLNEA-KGLDATARGKLLEK 537
GHM+ L + K LD +R K + K
Sbjct: 374 EMGHMESTLADIYKNLDGASRHKPVVK 400
>AF099002-2|AAC68740.2| 556|Caenorhabditis elegans Hypothetical
protein Y71H10B.1a protein.
Length = 556
Score = 29.1 bits (62), Expect = 3.1
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +1
Query: 298 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 465
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 302 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 359
Query: 466 --GHMQKFLNEA-KGLDATARGKLLEK 537
GHM+ L + K LD +R K + K
Sbjct: 360 EMGHMESTLADIYKNLDGASRHKPVVK 386
>AF099002-1|AAK68587.1| 559|Caenorhabditis elegans Hypothetical
protein Y71H10B.1b protein.
Length = 559
Score = 29.1 bits (62), Expect = 3.1
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +1
Query: 298 DAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN----TDIIELSD 465
DA++ K E+L G + G++ K+ S T +V + N TD L D
Sbjct: 305 DAFQKMMKCRGKEVLYVGDHIFGDVLRSKK--SRGWRTFLVVPELVNELTVWTDSKPLFD 362
Query: 466 --GHMQKFLNEA-KGLDATARGKLLEK 537
GHM+ L + K LD +R K + K
Sbjct: 363 EMGHMESTLADIYKNLDGASRHKPVVK 389
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -3
Query: 645 FLDKADKMMVDGIFST--WCICLAF 577
F+D D M+VDG S WC C F
Sbjct: 116 FIDMCDDMVVDGSISVDEWCDCFTF 140
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -3
Query: 645 FLDKADKMMVDGIFST--WCICLAF 577
F+D D M+VDG S WC C F
Sbjct: 124 FIDMCDDMVVDGSISVDEWCDCFTF 148
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 220 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 396
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 397 NACGTIALVHSVANNTDIIELSDGH 471
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 220 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 396
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 262 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 320
Query: 397 NACGTIALVHSVANNTDIIELSDGH 471
T+ +V NNT + EL+D H
Sbjct: 321 GKDSTVTYATNVFNNTRLKELNDNH 345
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 220 VMGLDPETLSWVPRPVLSVMLLFPISDAYENH-KKTEENEILSKGQEVSGNIFYMKQNIS 396
+M + T +W+ L ++ + A +H T +N +++ G S + +
Sbjct: 249 IMKIAKSTDAWIITSGLDEGVVKHLDSALHDHGNHTSKNHVVAIGI-ASWGMLKQRSRFV 307
Query: 397 NACGTIALVHSVANNTDIIELSDGH 471
T+ +V NNT + EL+D H
Sbjct: 308 GKDSTVTYATNVFNNTRLKELNDNH 332
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 115 TEMATETLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 243
TE A E VP+ ++ +LNKF+QK K +VDV DP++
Sbjct: 162 TEEAHEQ-VPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 203
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 115 TEMATETLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 243
TE A E VP+ ++ +LNKF+QK K +VDV DP++
Sbjct: 187 TEEAHEQ-VPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 228
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 115 TEMATETLVPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPET 243
TE A E VP+ ++ +LNKF+QK K +VDV DP++
Sbjct: 571 TEEAHEQ-VPVPADIALLNKFIQKEVKMMKDVVVDVQRQDPKS 612
>Z81543-5|CAB04427.2| 507|Caenorhabditis elegans Hypothetical
protein F49B2.5 protein.
Length = 507
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 361 SGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKG 501
SGN QNIS + +AL A D + + + LN+ +G
Sbjct: 46 SGNTIDKNQNISQSANFVALFQYDARTDDDLSFKKDDILEILNDTQG 92
>AC006641-1|AAF39824.2| 376|Caenorhabditis elegans Hypothetical
protein F45D11.10 protein.
Length = 376
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -3
Query: 174 LVQDIGIGFKRD*SFGRHFSHSNCGVDEGD*SIKW*QLDKSNYIFKIVERQ 22
L++ I R G HFS S+C + E + + W + ++NYI + E Q
Sbjct: 284 LIKAIDYWLTRGKEIGTHFSISSCEMLEEEARVLW-KAIRTNYIDLVEENQ 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,719,618
Number of Sequences: 27780
Number of extensions: 321979
Number of successful extensions: 958
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -