Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3f07
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0364 + 23495069-23495483,23496056-23496136,23496381-234964... 31 1.3
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 30 1.7
02_02_0031 - 6215098-6215231,6215963-6216122,6217225-6217395,621... 30 2.2
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 30 2.2
02_04_0186 + 20754045-20754692,20754772-20755057,20756160-20756668 29 2.9
12_01_1113 - 11888691-11888900,11891794-11892243,11892274-118929... 28 6.8
12_01_0066 + 562118-562459,562656-562724,562819-562923,563624-56... 28 6.8
11_01_0063 + 484011-484349,484546-484614,484701-484805,485503-48... 28 6.8
05_06_0077 + 25389219-25389412,25389976-25389979 28 6.8
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 28 6.8
08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029 28 9.0
01_05_0027 - 17331888-17331968,17332236-17332806,17333190-173333... 28 9.0
>03_05_0364 +
23495069-23495483,23496056-23496136,23496381-23496449,
23496778-23496883,23497461-23497491
Length = 233
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 434 EDPTPGEEVVFIDVSDLQPSHIKNHFRGTYWKDFV 538
E TP + ++V DL +H+K+H + TY D V
Sbjct: 138 ERATPKSVLELMNVKDLTLAHVKSHLQATYLLDLV 172
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 262 LVIRTSLMPKLCHSARSPSLVVSPGSLAC--FCFISVTS 152
L + T P + PS+VV PG +C FCF+ TS
Sbjct: 446 LCLETQGFPNAVNQPNFPSVVVQPGENSCRPFCFVLSTS 484
>02_02_0031 -
6215098-6215231,6215963-6216122,6217225-6217395,
6217556-6217746,6218047-6218287
Length = 298
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 319 GWSSHDAGQATGPNGIGQTTFGKSPAVA 402
GW S + ++ G NG+GQ G SP +A
Sbjct: 264 GWLSTNLHRSRGDNGVGQRWIGTSPPLA 291
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 356 PTALDRPLSAKALLSRWLMILDIRLREDPTPGEEVVFID--VSDLQPSHIKN 505
P ++RP+ KAL IL+ L++DP E + I V L+P +KN
Sbjct: 181 PPEIERPVYVKALSKTAASILESILKKDPHEAEFIQSIQEVVHSLEPVLVKN 232
>02_04_0186 + 20754045-20754692,20754772-20755057,20756160-20756668
Length = 480
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 137 VILGARLLWLLWTGYRG 87
V+ GA LLWL WTG+ G
Sbjct: 236 VLAGAGLLWLGWTGFNG 252
>12_01_1113 -
11888691-11888900,11891794-11892243,11892274-11892950,
11893396-11893957,11894121-11894207
Length = 661
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = +2
Query: 494 HIKNHFRGTYWKDFV-----WCMKSAYPLRFAEVHVINTQ 598
H ++H RG+ W+ W M YPL F H IN +
Sbjct: 241 HFRHHGRGSNWRAAHTNRRGWVMFLGYPLDFRNQHYINKE 280
>12_01_0066 +
562118-562459,562656-562724,562819-562923,563624-563743,
564085-564174,564223-564375
Length = 292
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 224 MTELWHKRRPDDEDILSSCQDAYIIPLRARSVGGRRMTLVRLPAPTALDR 373
+T+ + RR +D D ++ Y+I +ARS+ R +V +P DR
Sbjct: 175 LTKHYRNRRCNDPDFFLDFEEIYVIDSKARSI-TRAKVVVSVPEGKKRDR 223
>11_01_0063 +
484011-484349,484546-484614,484701-484805,485503-485622,
485975-486064,486115-486267
Length = 291
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 224 MTELWHKRRPDDEDILSSCQDAYIIPLRARSVGGRRMTLVRLPAPTALDR 373
+T+ + RR +D D ++ Y+I +ARS+ R +V +P DR
Sbjct: 174 LTKHYRNRRCNDPDFFLDFEEIYVIDSKARSI-TRAKVVVSVPEGKKRDR 222
>05_06_0077 + 25389219-25389412,25389976-25389979
Length = 65
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 289 CILTARQNILVIRTSLMPKLCHSARSPS 206
C+L Q +L+ RTSL+ H+ R PS
Sbjct: 5 CLLPRLQKLLLSRTSLLSSRLHARRPPS 32
>01_01_0025 +
188915-189132,190625-190705,191350-191506,191958-192161,
192248-192356,192401-192496,192724-193994,194200-194384,
194619-195055,197034-197077,197830-199036,199253-199479
Length = 1411
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 348 YRPQRHWTDHFRQKPCCRDGL*F 416
+R QR+W + CCR+GL F
Sbjct: 469 FRKQRYWDAYMSAMYCCREGLWF 491
>08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029
Length = 927
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +2
Query: 323 GRRMTLVRLPAPTALDRPLSAKALLSRWL----MILDIRLREDPTPGEEVVFIDVSDLQP 490
G RM L+ + R + K+LL RWL ++ I+L E+ FID + ++
Sbjct: 430 GHRMCLLSISMFPRGHR-IRRKSLLRRWLAEGLVVSQIQLNEEDAEDRFKEFIDRNIIEA 488
Query: 491 SHIKNHFRGTYWK 529
I N +W+
Sbjct: 489 VDIGNELEAKHWR 501
>01_05_0027 -
17331888-17331968,17332236-17332806,17333190-17333335,
17333412-17333459
Length = 281
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 242 KRRPDDEDILSSCQDAYIIPLRARSVGGRRMTLVRLPAPTA-LDRPLSAK 388
KRR DD SSC ++ + R+ GG+ + R PTA L RPLS++
Sbjct: 33 KRRVDDP-PSSSCSFKHVASKQPRTPGGQPVGPSRQRMPTAPLLRPLSSR 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,914,744
Number of Sequences: 37544
Number of extensions: 454451
Number of successful extensions: 1284
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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