Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3f06
         (269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28943-3|AAT81203.1|  408|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81107-8|CAB03231.3|  282|Caenorhabditis elegans Hypothetical pr...    25   7.3  

>U28943-3|AAT81203.1|  408|Caenorhabditis elegans Hypothetical
           protein E04F6.5b protein.
          Length = 408

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 139 KYYVYRVMCIDLSFKSY 189
           KY++ +++C+D  FK Y
Sbjct: 391 KYWISKLLCLDKQFKDY 407


>Z81107-8|CAB03231.3|  282|Caenorhabditis elegans Hypothetical
           protein R07H5.9 protein.
          Length = 282

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 11  NKLCITLKKKNLLNIEEMLYYKTT 82
           NK+ + LK+KN+    +++ YK T
Sbjct: 80  NKIMLALKEKNIKKTSKLMGYKIT 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,885,388
Number of Sequences: 27780
Number of extensions: 49668
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)