Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3f04
         (789 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    24   1.6  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   3.7  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   3.7  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   3.7  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   4.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   6.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   6.4  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   6.4  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   6.4  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.5  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   8.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   8.5  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 303 GAFIYTLASFLAIFVVSTTQLIVTNGFLQGL 395
           G F    ++   I   +TT LIVT  F QGL
Sbjct: 344 GFFDVKRSTLFGILATTTTYLIVTIQFNQGL 374


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 673 YHRRRPLRREKKKFHFNSNTTASKGAENARSV 768
           Y R + L  EK+ FHFN   T  +  E A S+
Sbjct: 190 YTRYQTLELEKE-FHFNKYLTRRRRIEIAESL 220


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 673 YHRRRPLRREKKKFHFNSNTTASKGAENARSV 768
           Y R + L  EK+ FHFN   T  +  E A S+
Sbjct: 190 YTRYQTLELEKE-FHFNKYLTRRRRIEIAESL 220


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 673 YHRRRPLRREKKKFHFNSNTTASKGAENARSV 768
           Y R + L  EK+ FHFN   T  +  E A S+
Sbjct: 190 YTRYQTLELEKE-FHFNKYLTRRRRIEIAESL 220


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 529 NFINSGYNIVINPIDALH 476
           N +++GY ++++  DAL+
Sbjct: 456 NLLDNGYRVILSNYDALY 473


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -2

Query: 557 PSKPVLGYRKFYKQRVQHRYQSNRCLT 477
           PS       KFY+Q  Q     N C T
Sbjct: 669 PSGDCFYENKFYRQEAQWTSSDNPCTT 695


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 282 MKDFSKLCSPKN 247
           M DF  LC PKN
Sbjct: 373 MDDFHGLCGPKN 384


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 685 RPLRREKKKFHFNSNTTASKGAENARSVE 771
           + L   +K+FHFN   T ++  E A +++
Sbjct: 263 KQLTELEKEFHFNKYLTRARRIEIASALQ 291


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 685 RPLRREKKKFHFNSNTTASKGAENARSVE 771
           + L   +K+FHFN   T ++  E A +++
Sbjct: 52  KQLTELEKEFHFNKYLTRARRIEIASALQ 80


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 685 RPLRREKKKFHFNSNTTASKGAENARSVE 771
           + L   +K+FHFN   T ++  E A +++
Sbjct: 52  KQLTELEKEFHFNKYLTRARRIEIASALQ 80


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 331 NDASVYIKAPIRPTCLNERLFKA 263
           ND  ++     RP  L ERLF+A
Sbjct: 225 NDVLLFFVKVFRPEPLCERLFEA 247


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 282 MKDFSKLCSPKN 247
           M DF  LC PKN
Sbjct: 356 MDDFLGLCGPKN 367


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 485 IYWIDNDVVPAVY 523
           IYW+ +D + +VY
Sbjct: 60  IYWLQDDALKSVY 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,830
Number of Sequences: 336
Number of extensions: 4154
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)