Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3f04
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0201 + 1746088-1747086,1748735-1748806,1750106-1750168,175... 33 0.34
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 30 1.8
08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603 29 3.2
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914... 29 3.2
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322... 29 3.2
05_05_0275 - 23762905-23762995,23763775-23763841,23763925-237639... 28 7.4
10_07_0114 + 13005620-13005976 28 9.7
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950... 28 9.7
>01_01_0201 +
1746088-1747086,1748735-1748806,1750106-1750168,
1750355-1750489,1750604-1750669
Length = 444
Score = 32.7 bits (71), Expect = 0.34
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = +2
Query: 524 KIYDNPIRV*RDSSDYLCHISSQYFRSSSHASCTMVYGEEIENVRKDCPDTTDAGH*GGK 703
+IY NP RV S + ++ Q + +++ YGE+ + + CP TT AG
Sbjct: 359 RIYTNPARVLTGS---MLRVADQEYTTATIPLAIAAYGEDKTSKSQTCPYTTTAG----- 410
Query: 704 RKNSISILTRRHPKERKTRDQ 766
S+L R PK + DQ
Sbjct: 411 ---DKSVLLREDPKLPRLTDQ 428
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 275 SFIKTSRSYRCLYIHTSIIPSNICSIHNSVNCHKRIPTGPRN-GSTNSGVVY 427
SF+ SY ++++ IP + CH R+P G RN G+T + +VY
Sbjct: 490 SFLDAYSSYHQIHMNPPDIPKTAFITLLGIFCHLRMPFGLRNAGATFARLVY 541
>08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603
Length = 134
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Frame = +2
Query: 500 NDVVPAVYKIYDNPIRV*RDSSDY---LCHISSQYF---RSSSHASC-TMVYGEEIENVR 658
N ++P+ Y++ D+ V RD+ + +CH+S ++ R + SC T ++ +V
Sbjct: 57 NRMIPSRYQVSDDFNHVSRDTHEVSCDICHVSDDFYHVSRDTREVSCDTCQVSDDFYHVS 116
Query: 659 KDCPDTTD 682
+D + +D
Sbjct: 117 RDTCEVSD 124
>05_07_0004 +
26990250-26990516,26990877-26990931,26991286-26991461,
26991702-26991923,26992001-26992239,26992437-26992962,
26993042-26993315,26993391-26994009,26994082-26994121,
26994263-26994310,26994548-26994814,26994892-26995155,
26995260-26995904
Length = 1213
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 369 VTNGFLQGLGMGLLIPVSYTSFNSYFTKKKVLYLSLCKASIGLITMLYPLFI 524
V GF+QG GMG L + ++SF L LS + ++ +L+ + I
Sbjct: 266 VKEGFIQGFGMGFLNLIYFSSFGLIVWYGSKLSLSRGYSGADIMNILFGIMI 317
>05_06_0156 -
26031463-26031572,26031961-26032039,26032133-26032261,
26032362-26032559,26032741-26032900,26032980-26033147,
26033290-26033405,26033491-26033586,26033675-26034058,
26035150-26035572,26037202-26037315,26037969-26038017,
26038103-26038262,26038345-26039014
Length = 951
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 423 YTSFNSYFTKKKVLYLSLCKASIGL--ITMLYPLFIKFTITQYGFRGTL 563
Y YF + K YL+L K G+ + ML + I FT+ FR +L
Sbjct: 505 YAPLGKYFGETKPTYLTLVKGVEGITGVIMLVCMIIAFTLATRWFRRSL 553
>05_05_0275 -
23762905-23762995,23763775-23763841,23763925-23763976,
23764966-23765124
Length = 122
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 78 GWGYVVCVGLSVIFIAGTAHQ 140
GWG VV L+ + +AGT H+
Sbjct: 67 GWGAVVVAELTALIVAGTVHR 87
>10_07_0114 + 13005620-13005976
Length = 118
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 243 AGFSANIALKSLSLRQVGLIGAFIYTLASFLAIFVVSTTQ 362
AG++ + S ++QVG +Y LA ++++ VST+Q
Sbjct: 26 AGYTTAEDVSSDFIKQVGKFAVTVYKLARGVSLYYVSTSQ 65
>07_03_1342 -
25891761-25892102,25892588-25893135,25893342-25895012,
25895818-25896745
Length = 1162
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 291 VGLIGAFIYTLASFLAIFVVSTTQLIVTNGF 383
VG IGA + + LAI+VV + +L NGF
Sbjct: 607 VGCIGAALLVIFIALAIYVVRSQELCGRNGF 637
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,055,037
Number of Sequences: 37544
Number of extensions: 409245
Number of successful extensions: 920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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