Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3f01
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0512 - 22852009-22852140,22852686-22852820,22853739-228537...   293   1e-79
07_01_0126 - 947072-948687,949454-949627,950117-951572                 31   1.4  
06_03_1386 + 29816744-29816941,29817030-29817330,29817421-298175...    29   4.3  
01_06_0009 - 25535480-25535529,25536225-25536252,25536427-255364...    28   7.5  
05_03_0336 - 12643942-12644816,12645021-12645276,12645667-12646380     28   9.9  

>01_05_0512 -
           22852009-22852140,22852686-22852820,22853739-22853787,
           22854043-22854128,22854211-22854291,22854394-22854496,
           22854577-22854684,22854799-22854919,22855532-22855712
          Length = 331

 Score =  293 bits (718), Expect = 1e-79
 Identities = 127/220 (57%), Positives = 173/220 (78%)
 Frame = +3

Query: 126 FNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPSPLSVS 305
           FNI  G+LE + RG + G+L  +DY NL QCE L+D+K+HL  T+YG +L NEPSPL  +
Sbjct: 9   FNIHDGFLEAIVRGNRSGLLTAADYNNLCQCENLDDVKMHLTATEYGPYLQNEPSPLHTT 68

Query: 306 TIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPK 485
           TI +K   KLV E++H+   + EPLSTFL +ITY +MIDN++L++TGTLH+R ++EL+ K
Sbjct: 69  TIVEKCTLKLVDEYKHMMCQATEPLSTFLQYITYGHMIDNVVLIVTGTLHERDVNELLEK 128

Query: 486 CHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKA 665
           CHPLG F+ + ++ VA    ELY  VLVDTPLAP+F +CI+ +DLD+MNIEI+RNTLYKA
Sbjct: 129 CHPLGMFDSIASLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKA 188

Query: 666 YLEAFYDFCKQIGGTTADVMCEILAFEADRRAIIITINSF 785
           YLE FY FC+++GG TA++MC++L+FEADRRA+ ITIN +
Sbjct: 189 YLEDFYKFCEKLGGATAEIMCDLLSFEADRRAVNITINRY 228


>07_01_0126 - 947072-948687,949454-949627,950117-951572
          Length = 1081

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 282 EPSPLSVSTIDDKLREKL--VIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLH 455
           + S LSVS +D    EK    I F  L    V+PLS   +F  ++ +++  + +I   L 
Sbjct: 532 DASLLSVSALDPVHTEKFPGYIVFSQLPV-LVDPLSDLQNFRLHTSLMETFLSVILSDLA 590

Query: 456 QRPISELIPKC 488
            + IS LI KC
Sbjct: 591 TKSISFLINKC 601


>06_03_1386 +
           29816744-29816941,29817030-29817330,29817421-29817579,
           29818916-29819211,29819534-29819761
          Length = 393

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +3

Query: 93  LKIIIKMKGCIFNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTF 272
           L++++K +    NI+  Y+ GLC GF       SD L L +      ++  L     G  
Sbjct: 262 LRVVLKGENVEPNINYDYIAGLCEGF-----TGSDILELCKQAAFYPIRELLNNEKDGR- 315

Query: 273 LANEPSPLSVSTIDDKL 323
            A++P PL  S ++  L
Sbjct: 316 KADKPRPLRQSDLEKAL 332


>01_06_0009 -
           25535480-25535529,25536225-25536252,25536427-25536496,
           25537020-25537063,25538064-25538228,25538411-25538491,
           25539224-25540258
          Length = 490

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 90  SLKIIIKMKGCIF-NIDAGYLEGLCRGFKCGILKQSDY 200
           S++  I  KG +F NID  +L+G  RGF C  L+   +
Sbjct: 195 SMESPIHSKGYLFWNIDERFLKGQSRGFLCFSLEDETF 232


>05_03_0336 - 12643942-12644816,12645021-12645276,12645667-12646380
          Length = 614

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 4/127 (3%)
 Frame = +3

Query: 243 HLQGTDYGTFLANEPSPLSVSTIDDKLREKLVIEFQHLRNHSVEP---LSTFLDFITYSY 413
           HL  T  G F +      + +   + L EKLV   + L N++V+     S F + ++++ 
Sbjct: 225 HLDTTAGGAFFSKTDLVFAQAKTTNALSEKLVANDKVLENNNVKLDGFASAFQNQLSFNK 284

Query: 414 MIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELY-NAVLVDTPLAPF 590
           MI+  +  +   +     S  IP   P  S E ++AI       +++ N  L+D    P 
Sbjct: 285 MIETQLAQLAALIPANE-SWRIPG-QPDSSIENVKAITTRGVIQKIHINVPLLDAMQVPT 342

Query: 591 FVDCISE 611
           +   + +
Sbjct: 343 YAHYLKD 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,106,475
Number of Sequences: 37544
Number of extensions: 450412
Number of successful extensions: 1056
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)