Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3f01
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006611-1|AAK85455.2|  348|Caenorhabditis elegans Vacuolar h at...   387   e-108
Z78411-4|CAB01645.2|  370|Caenorhabditis elegans Hypothetical pr...    34   0.14 
Z93383-2|CAB07624.1|  253|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p...    28   6.7  

>AC006611-1|AAK85455.2|  348|Caenorhabditis elegans Vacuolar h
           atpase protein 16 protein.
          Length = 348

 Score =  387 bits (952), Expect = e-108
 Identities = 178/225 (79%), Positives = 202/225 (89%)
 Frame = +3

Query: 123 IFNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPSPLSV 302
           +FNID GYLE L RG K G+L Q+DY NLVQCETLEDLKLH+Q TDYG FLANEP  ++V
Sbjct: 5   LFNIDHGYLEALTRGLKGGLLAQADYANLVQCETLEDLKLHIQSTDYGNFLANEPGAITV 64

Query: 303 STIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIP 482
             ID+KL+EKLV EF HLRN+++EPL+TFLD+ITYSYMIDNIILLITGTLHQRPISELI 
Sbjct: 65  QVIDEKLKEKLVTEFTHLRNNALEPLATFLDYITYSYMIDNIILLITGTLHQRPISELIN 124

Query: 483 KCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYK 662
           KCHPLGSFEQMEAIH+A+TPAELYNAVLVDTPLA +FVDCI+EQDLDEMN+E+IRNTLYK
Sbjct: 125 KCHPLGSFEQMEAIHIASTPAELYNAVLVDTPLANYFVDCINEQDLDEMNVEVIRNTLYK 184

Query: 663 AYLEAFYDFCKQIGGTTADVMCEILAFEADRRAIIITINSFGTEL 797
           AY+E FY FC  +GG TA+VMC+ILAFEADRR+IIITINSF TEL
Sbjct: 185 AYIEDFYKFCAGLGGKTAEVMCDILAFEADRRSIIITINSFDTEL 229


>Z78411-4|CAB01645.2|  370|Caenorhabditis elegans Hypothetical
           protein F02D8.3 protein.
          Length = 370

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 26/94 (27%), Positives = 45/94 (47%)
 Frame = +3

Query: 183 LKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPSPLSVSTIDDKLREKLVIEFQHLRN 362
           L++ D +NL Q    E ++L L+  D G+     P P+ V+ +  K  E     FQ+  +
Sbjct: 153 LERQD-INL-QTRLAEKMRLRLEKYDDGSLKMCNPCPIPVTIVASKYDE-----FQNFES 205

Query: 363 HSVEPLSTFLDFITYSYMIDNIILLITGTLHQRP 464
                L  FL F+ YSY  +  +++ +  + Q P
Sbjct: 206 EKRRHLCQFLRFLAYSYGAN--LMMFSSRMEQFP 237


>Z93383-2|CAB07624.1|  253|Caenorhabditis elegans Hypothetical
           protein F54B8.2 protein.
          Length = 253

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = +3

Query: 354 LRNHSVEPLSTFLDFITYS----YM--IDNIILLITGTLHQRPISELIPKCHPL 497
           L+N S+EPL+ F+  + ++    Y+  I        G + Q  + E IP+CHP+
Sbjct: 7   LQNTSLEPLTDFISEVNFNRCTLYLNSIPKYRDYTIGQIVQNDVIEYIPRCHPM 60


>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical
           protein H05L14.2 protein.
          Length = 2162

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 282 EPSPLSVSTIDDKLREKLVIEFQHLRNHSVEP-LSTFLDFI 401
           +PS  +  T  +K+RE+ +I++Q+      EP + TFLDFI
Sbjct: 54  KPSYRNTLTKLEKIREE-IIDYQNRERPPTEPHMKTFLDFI 93


>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
           protein H05L14.2 protein.
          Length = 2162

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 282 EPSPLSVSTIDDKLREKLVIEFQHLRNHSVEP-LSTFLDFI 401
           +PS  +  T  +K+RE+ +I++Q+      EP + TFLDFI
Sbjct: 54  KPSYRNTLTKLEKIREE-IIDYQNRERPPTEPHMKTFLDFI 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,379,229
Number of Sequences: 27780
Number of extensions: 402696
Number of successful extensions: 1091
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)