Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3e09
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-3|CAA92488.1|  144|Caenorhabditis elegans Hypothetical pr...    51   6e-07
Z75553-3|CAA99948.1|  407|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF002198-8|AAF99931.2|  300|Caenorhabditis elegans Serpentine re...    27   8.9  

>Z68220-3|CAA92488.1|  144|Caenorhabditis elegans Hypothetical
           protein T20D3.6 protein.
          Length = 144

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 29/76 (38%), Positives = 41/76 (53%)
 Frame = +1

Query: 184 KEMGASHHVETTREKFHRKFTENPFVPLGCLATAGALSMGLWSFRTGKTRLSQQMMRVRI 363
           ++M      +T      +K   NP VPLG LAT G L   + +     +R +Q  MR R+
Sbjct: 33  QDMSGGSRGQTASTTALQKALNNPLVPLGMLATTGCLIGMMVATLRRSSRGAQYFMRGRV 92

Query: 364 LAQGLTIAALVIGVVI 411
           +AQG T+AALV G V+
Sbjct: 93  VAQGFTVAALVGGAVM 108


>Z75553-3|CAA99948.1|  407|Caenorhabditis elegans Hypothetical
           protein ZC443.3 protein.
          Length = 407

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 326 FPVLKLQRPMDKAPAVAKQPRGTNGFSVNFL 234
           F VLKL+R  D+  A  KQP  T   ++  L
Sbjct: 83  FHVLKLERHFDRMIATRKQPDVTGDMAIQIL 113


>AF002198-8|AAF99931.2|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 3 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 190 FPCAVAPNVNPLVLVQLTFSSF*KLTVSNLYIKL*QHVLQSSFVLKL 50
           F C   P V+  VL +  FSSF  +      IKL    ++S F+L +
Sbjct: 231 FLCDFVPTVSNYVLPKFPFSSFKNIGPYVYIIKLVGSAVESYFILNI 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,682,311
Number of Sequences: 27780
Number of extensions: 225202
Number of successful extensions: 498
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)