Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3e07
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.033
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 31 0.17
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.53
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 3.7
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 26 4.9
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 6.5
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 6.5
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 6.5
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 8.6
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 8.6
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 33.5 bits (73), Expect = 0.033
Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 87 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAW 266
+PT S TP S TTA+S T PL N +T T A S+ +S NS TT +A
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNS--TTATSAS 469
Query: 267 STP-TSYGS 290
STP TS S
Sbjct: 470 STPLTSVNS 478
Score = 29.1 bits (62), Expect = 0.70
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 87 MPTKPQSPTPNSK---TIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR* 257
+P+ S TP S T T+ASS P+T++ ST T A S+ +S +S +T
Sbjct: 282 LPSSTPSSTPLSSANSTTATSASSTPLTSV------NSTTTTSASSTPLSSVSSANSTTA 335
Query: 258 TAW-STPTS 281
T+ STP S
Sbjct: 336 TSTSSTPLS 344
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 120 SKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWS-TPTSYGSKA 296
+ T T+ASS P+T++ A ++ T + S T++ T +A S T TS S A
Sbjct: 347 NSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTA 406
Query: 297 P 299
P
Sbjct: 407 P 407
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 120 SKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWS-TPTSYGSKA 296
+ T T+ASS P+T++ A ++ T + S T++ T +A S T TS S A
Sbjct: 461 NSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTA 520
Query: 297 P 299
P
Sbjct: 521 P 521
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 87 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRT 200
+PT S TP S TTA+S T PL N +T T
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTAT 564
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 31.1 bits (67), Expect = 0.17
Identities = 21/86 (24%), Positives = 44/86 (51%)
Frame = -2
Query: 631 GPLGLKSFDAVGPVGHVVMVRGCLNCQRQILITLSVHNLEVDLVVLPQRNELPADFWTRL 452
GP GL + D + GH V++ + + L+ + N+++D V+ +R +L D +
Sbjct: 1764 GPAGLAAADQLNRAGHHVVIYERAD-RPGGLLQYGIPNMKLDKKVVERRIQLMIDEGIEV 1822
Query: 451 VLAIAVGKSAIVAVLIVQRQSETVAL 374
+ + VGK+ V++ + + + V L
Sbjct: 1823 LTNVEVGKNGDVSLDELHKVYDAVVL 1848
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 173 EKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 304
+K I + +KS + ++ K+++ NK+N +E A Q W + K+
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 200 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 292
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 741 AMRLPQVSVGLESTNASLYSRLYMKNKTSLSYLAGCRV 628
A+RLP + V + A + + +K K ++ ++AGCRV
Sbjct: 577 ALRLPPILVQRVTGEAIISAIFDIKAKRAVVHVAGCRV 614
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 143 ILVADYDHSVEKSKQIYEDKKSEVITNVVN-KLIRNNKMNCMEYAYQLWLQGSKDIVREC 319
+LV + + E+S + + + N+ KL NN +E Q +LQG K+ +++C
Sbjct: 152 VLVIELLETQERSSKRRRREGPTMKANIQRQKLDFNNLKKAIELRNQKFLQGIKEYIKKC 211
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 732 LPQVSVGLESTNASLYSRLYMKNKTSLSYLAG 637
LPQV++G S +A L +N+T L+ ++G
Sbjct: 65 LPQVNIGANSFSAETPVDLKKENETELANISG 96
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +2
Query: 80 SLYANETSVSDSKLEDDLY-----NSILVADYDHSVEKSKQIYEDKKSEVITNV 226
+L N S K++D L+ N L +HS K K+ YE S ++TN+
Sbjct: 738 NLMENVEEESIDKIKDILFDIHVDNLYLFPQLEHSFYKRKKNYEKALSVLVTNI 791
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 119 LEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNN 250
LE+D + ++ + ++ SK I D+ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 8.6
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 87 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAW 266
+PT + T ++T TTA+ + TT A T+ +Q T + ET TA
Sbjct: 1147 LPTTGATGTAGTETQLTTATEVQPTTGATGTAGTETQVTTGTETQA--TTATETQATTAT 1204
Query: 267 STPTSYGS 290
T+ G+
Sbjct: 1205 EVQTTTGA 1212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,720
Number of Sequences: 5004
Number of extensions: 51411
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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