Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3e07
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496... 34 0.14
11_06_0693 - 26334574-26336121 31 0.73
09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990... 31 0.97
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799... 31 0.97
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578... 29 2.9
08_02_1497 - 27548328-27548534,27548876-27548978,27549074-275491... 29 3.9
04_01_0623 - 8198301-8198504,8198805-8198907,8199065-8199144,819... 29 3.9
11_06_0232 + 21559467-21559532,21559586-21560200 29 5.2
06_01_1082 - 8847795-8848033,8848511-8848724 28 6.8
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317... 28 9.0
06_03_0948 - 26252230-26252460,26252567-26252614,26252703-262530... 28 9.0
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 28 9.0
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 28 9.0
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953... 28 9.0
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 28 9.0
>06_02_0200 - 12946139-12946282,12947636-12947842,12949506-12949629,
12950167-12950369,12950922-12951620,12951723-12951784,
12952395-12952404,12954905-12957631
Length = 1391
Score = 33.9 bits (74), Expect = 0.14
Identities = 25/92 (27%), Positives = 39/92 (42%)
Frame = -2
Query: 733 VTPGVGWPREHQRLVVFAIVHEEQNVVVVLSGLQGPLGLKSFDAVGPVGHVVMVRGCLNC 554
V P V RL V + E N + + ++ ++ DA GP G ++ G N
Sbjct: 1200 VFPMVALNESMTRLAVGDAIGEIHNATIRVYDIESVTKIRILDASGPPGLPSLLDGSSNT 1259
Query: 553 QRQILITLSVHNLEVDLVVLPQRNELPADFWT 458
ILIT +LE + +V N L +W+
Sbjct: 1260 TATILITALSFSLEGEGLVAFSENGLMIRWWS 1291
>11_06_0693 - 26334574-26336121
Length = 515
Score = 31.5 bits (68), Expect = 0.73
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 27 PTRKR*KPFKLFCVFSWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLKR 179
P R+R P +L F+ R C+P+ P SP +S SS P +PL R
Sbjct: 38 PARRR--PLELLA-FAVRHCLPSSPPSPHHHSLAALLLLSSPPPPALPLLR 85
>09_06_0106 -
20898480-20898680,20898762-20898864,20898953-20899047,
20899113-20899135,20899725-20899799,20900219-20900267,
20900349-20900414,20901257-20901306,20901688-20901812,
20903488-20903600
Length = 299
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 611 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 721
GF WT +P K+DN F RE +E L L PTD
Sbjct: 181 GFDGAWTKEPLKFDNS-YFLELLREESEGL-LKLPTD 215
>04_04_1020 +
30179214-30179285,30179597-30179671,30179839-30179947,
30180425-30180642,30180729-30181309,30181387-30182185
Length = 617
Score = 31.1 bits (67), Expect = 0.97
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 389 ALTLDDENSNDG-RLAYGDGKDKTSPKVSWKFVPLWENNKVYFKIVNTQRNQYLTLAVQT 565
A + DE+ DG R K+ + +P+W + VYF I NTQ T Q
Sbjct: 357 AAIVSDEDLEDGDRWRLCTVSQVEEVKILLRLIPIWLTSAVYF-IANTQAQ--TTFVQQG 413
Query: 566 TPNHNHMAYGANSV 607
T +A GA SV
Sbjct: 414 TKTDGRIARGAFSV 427
>04_04_1267 - 32257035-32257337,32257423-32257570,32257656-32257893,
32257994-32258351,32258791-32258969,32259071-32259175,
32259539-32260871
Length = 887
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 57 LFCVFSWRLCMPTKPQSPTPNSKTIF---TTASSLPITTIPLKRANRSTRTRRAKSSQMS 227
L C+ LC+ P + P S +F A++LP P+ A+R++ +++ + S
Sbjct: 815 LLCIHIGLLCVQDNPNNRPPMSSVVFMLENEAAALPAPIQPVYFAHRASGAKQSGGNTSS 874
Query: 228 *TNSYETT 251
N+ T
Sbjct: 875 SNNNMSLT 882
>08_02_1497 -
27548328-27548534,27548876-27548978,27549074-27549153,
27549245-27549327,27549899-27549947,27550028-27550093,
27550254-27550303,27550762-27550886,27551842-27551954
Length = 291
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 611 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 721
GF+ WT +P K+DN + E +E L L PTD
Sbjct: 171 GFEGAWTQEPLKFDNSYFLELLKGE-SEGL-LKLPTD 205
>04_01_0623 -
8198301-8198504,8198805-8198907,8199065-8199144,
8199239-8199321,8199593-8199641,8199736-8199801,
8200118-8200167,8200299-8200423,8200568-8200683
Length = 291
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 611 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 721
GF WT P K+DN F +E +E L L PTD
Sbjct: 172 GFDGAWTKDPLKFDNS-YFIELLKENSEGL-LKLPTD 206
>11_06_0232 + 21559467-21559532,21559586-21560200
Length = 226
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 105 SPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYET 248
+P P ++T ASS P T P + +R R RRA+++Q +S T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 626 WTLQPAKYDNDVLFFMYNREYNEALVL 706
W Y DVL F YN+EY++ V+
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDVAVV 85
>12_02_0847 +
23630937-23631099,23631200-23631396,23631604-23631738,
23631904-23632077,23632195-23632407,23632507-23632751,
23632890-23632930,23633200-23633238,23633552-23633565
Length = 406
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 161 DHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLW--LQGSKDIVREC 319
D +++ K+ Y + + + N + ++ N + AY+LW G K +REC
Sbjct: 301 DEKLQELKRDYGEGAHKAVMNALMEMKEYNVLADRSIAYELWNYKDGRKATLREC 355
>06_03_0948 -
26252230-26252460,26252567-26252614,26252703-26253041,
26253132-26253260,26255404-26255967
Length = 436
Score = 27.9 bits (59), Expect = 9.0
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Frame = -2
Query: 535 TLSVHNLEVDLVVLPQRNELPADFWTRLVLAIAVGKSAIV----AVLIVQRQ------SE 386
T SV LEVD + +R ELPA RL+ + V S I+ A+++ Q ++
Sbjct: 77 TASVQTLEVDKATMMRRCELPARD-LRLLDPLFVYPSTILGRERAIVVNLEQIRCVITAD 135
Query: 385 TVALVHQLNVVFCEYKSELNREAL 314
V L++ L+ +Y +EL R L
Sbjct: 136 EVLLLNSLDSYVLQYAAELQRRLL 159
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/98 (22%), Positives = 42/98 (42%)
Frame = +2
Query: 113 SKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 292
+K D I++ D EK+ ++ + SE + N + NC EY L +
Sbjct: 241 AKKSDIKDQPIVLRRSDTESEKNDELDQTPASEPSSMSHNSANSTIRFNCREYRVILRKE 300
Query: 293 GSKDIVRECFPVEFRLIFAENNIKLMYKRDGLALTLDD 406
+ V + AE ++ +++R+G+ L +DD
Sbjct: 301 LTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDD 338
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 574 VRGCLNCQRQILITLSVHNLEVDLVVLPQRNELPADFWTRLVLAI 440
+RG L+ QIL E++L P+++ D W + LA+
Sbjct: 467 IRGVLDLTEQILGQFGFRYYEINLSTRPEKSVGSDDIWEKATLAL 511
>02_02_0535 -
11292509-11294679,11294971-11295040,11295268-11295324,
11298629-11298789,11299123-11299156
Length = 830
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 530 QRNQYLTLAVQTTPNHNHMAYGANS 604
QR Q L+ + +T P +NH ++G+N+
Sbjct: 790 QRKQLLSFSQRTVPVNNHSSHGSNN 814
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = -2
Query: 631 GPLGLKSFDAVGPVGHVVMVRGCLNCQRQILITLSVHNLEVDLVVLPQRN-ELPADFWTR 455
GP GL + D + +GH V V + + L+ V N++ D + + QR L A+
Sbjct: 1805 GPAGLAAADQLNKMGHFVTVFERAD-RIGGLMMYGVPNMKTDKIEIVQRRVNLMAEEGIT 1863
Query: 454 LVLAIAVGKSAIVAVLIVQRQSETVAL 374
V+ VG + ++ ++ +++ V L
Sbjct: 1864 FVVNANVGSDPLYSIERLRSENDAVIL 1890
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,809,362
Number of Sequences: 37544
Number of extensions: 336287
Number of successful extensions: 1165
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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