Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3e05
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215...    31   1.3  
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662...    29   2.9  
08_02_1409 - 26864544-26864658,26864787-26864916,26864953-268652...    29   3.9  
01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771...    29   5.2  
02_05_0598 + 30250535-30251218                                         28   9.0  

>01_06_0230 +
           27718840-27720188,27720983-27721174,27721488-27721569,
           27721651-27721839,27721964-27722077,27722470-27722560,
           27722632-27722789,27723401-27723826,27724355-27724727,
           27725075-27725238
          Length = 1045

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 232 CILGKCKVSLITFKFLINVK*NHKKMTVTYTGEVATCRGFGTFLKVLY 375
           C  G+CK +L+  + +  V   +K + VTYTG + TC   G+     Y
Sbjct: 714 CSGGRCKEALLQVEKICKVA--NKPLVVTYTGLIQTCIDNGSMENAKY 759


>10_08_0894 -
           21365629-21365766,21365849-21365950,21366042-21366284,
           21366685-21366813,21366999-21367103,21367196-21367387,
           21367486-21367639,21368148-21368209,21368291-21368437,
           21368517-21368564,21369091-21369228,21369305-21369451,
           21370579-21370665,21370754-21370861,21370941-21371041,
           21371870-21371996,21372820-21372936,21373029-21373106,
           21373240-21373284,21373637-21373756,21373838-21373964,
           21374033-21374253,21374347-21374529,21374772-21374924,
           21375051-21375146,21375226-21375331,21375410-21375492,
           21375576-21375728,21375819-21376058,21376367-21376414,
           21376782-21376928,21377007-21377115,21377200-21377345,
           21377715-21377809,21377944-21378049,21378177-21378368,
           21378456-21378686,21378772-21378866,21379426-21379529,
           21380040-21380284,21380300-21380347,21380376-21380480,
           21380630-21380767,21381458-21381649,21381738-21381914,
           21382001-21382129,21382203-21382316,21382407-21382746,
           21382836-21383064,21383155-21383455,21384311-21384358,
           21387963-21388355
          Length = 2493

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 457 MLN*VYNTKAGKLEDLATPVCIYCRAICIKLLKKSQNLGKLLLHRCK 317
           M N  Y    G ++     +   CR  C  ++K S  LG +LLH CK
Sbjct: 690 MSNTTYEAAEGAVQQPQVMILDICRESCPLIIKLS--LGDVLLHNCK 734


>08_02_1409 -
           26864544-26864658,26864787-26864916,26864953-26865283,
           26866507-26866626,26867489-26867821,26867915-26868001,
           26868093-26868320,26868434-26868565,26868649-26868861,
           26869376-26869417,26869829-26869894,26870230-26870274,
           26870367-26870429,26870757-26870827,26871149-26871249,
           26871458-26871534,26872415-26872459
          Length = 732

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
 Frame = -2

Query: 739 ISSLTPSSDRDIHSARLSDASTSHVHPVRVSWLTRRRQSNQATVS---LCIDSTSGSLLQ 569
           I ++  SS + I +  +  AS   V  +R  +L++R  + +A        +DS  G L  
Sbjct: 219 IQTIARSSHKMIEAV-MQSASKGKVQTIRQGYLSKRSSNLRADWKRRFFVLDSR-GMLYY 276

Query: 568 *HRNLVRTTKG--SHSRGNDN-----NSLFLRTFSSHFHLEVSD 458
             + + RT  G  SH R   N     + L  R FSSH+H  + D
Sbjct: 277 YRKQINRTPGGCSSHPRSIGNPTEHGSGLLSRLFSSHYHGIIHD 320


>01_01_0977 -
           7717808-7717837,7718227-7718327,7718449-7718548,
           7718706-7718822,7718913-7718990,7719980-7720058,
           7720184-7720249,7720373-7720441,7720890-7721188
          Length = 312

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 481 AKRTFEGIVNYCHFHGNVIPLSFVLGFYVTVVMNR 585
           A  T E +    H  GNV+   FV+GF + V  NR
Sbjct: 238 ATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNR 272


>02_05_0598 + 30250535-30251218
          Length = 227

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 353 PKPRQVATSPV*VTVIFL*FYFTLIRNLKVISETLHFPRIQ 231
           P  R   +SP+   ++FL  YF ++RN +  S  + F  +Q
Sbjct: 114 PAARLFRSSPLTPFLLFLTLYFAVVRNQQAFSRFVRFNAMQ 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,992,305
Number of Sequences: 37544
Number of extensions: 349644
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)