Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d22
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   1.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.6  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.4  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   4.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.0  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   8.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.0  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 683 WICHWSFWPYCW 718
           W+ HW+F P  W
Sbjct: 256 WLAHWAFAPIRW 267


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 51  LSRQKSGEKRPSLSGLTGKNSTKYLNQNLKMRYFLSYLFVLLVGLAI 191
           L R     +RPS  GL  +N  K+L    +   F       L+G+A+
Sbjct: 139 LDRPLPAPERPSFEGLKRQNPVKFLRAIEEYGRFFGLDSQRLLGVAM 185


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 185 CNPDIFAVLRPQWK 226
           C+PD++AV+   WK
Sbjct: 719 CSPDLYAVMLNCWK 732


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 506 TSKWFRIFLQHTREHDSSDQTVNGDGLAEDDGDQI 402
           T +  +I+ Q+ R     +    G+G +E  GD I
Sbjct: 282 TERQIKIWFQNRRMKWKKENKTKGEGGSEGGGDDI 316



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 317 GQGNGKGDSEGTPHIRGSVLQEPSQ 243
           GQ       +G PH +  + Q+P+Q
Sbjct: 192 GQQGANMHQQGPPHQQPPIQQQPNQ 216


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 506 TSKWFRIFLQHTREHDSSDQTVNGDGLAEDDGDQI 402
           T +  +I+ Q+ R     +    G+G +E  GD I
Sbjct: 284 TERQIKIWFQNRRMKWKKENKTKGEGGSEGGGDDI 318



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 317 GQGNGKGDSEGTPHIRGSVLQEPSQ 243
           GQ       +G PH +  + Q+P+Q
Sbjct: 194 GQQGANMHQQGPPHQQPPIQQQPNQ 218


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 137 QDEILLKLLIRAPGGTCNPDIFAVLR 214
           QD+ILL      PGG   P   AV R
Sbjct: 31  QDDILLTKKKSKPGGKTAPQPVAVAR 56


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 132 NLKMRYFLSYLFVLLVGLAIPIFSLYY 212
           NL+ +  L +   LL  +  PI + YY
Sbjct: 109 NLRPKLLLKHNLFLLDNIVKPIIAFYY 135


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 326 SDNGQGNGKGDSEGTPHIRGS 264
           S NG G  + +++ T H  G+
Sbjct: 47  STNGDGGARSNADSTSHTDGA 67


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 326 SDNGQGNGKGDSEGTPHIRGS 264
           S NG G  + +++ T H  G+
Sbjct: 203 STNGDGGARSNADSTSHTDGA 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,564
Number of Sequences: 336
Number of extensions: 3818
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)