Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3d20
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0175 - 18936752-18937621,18938855-18941641 32 0.28
09_02_0543 + 10427321-10428315,10428440-10429154 29 2.0
02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608 29 2.0
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 29 2.7
05_07_0100 + 27679280-27680320 29 3.5
04_03_1022 - 21778315-21779007 28 4.6
11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584 28 6.1
08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754 28 6.1
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 28 6.1
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592 28 6.1
>01_05_0175 - 18936752-18937621,18938855-18941641
Length = 1218
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 199 VWQCRAERTHTPP-XXXXXXXXTSPQRRPALAAPCQGPLTPPH 324
VW+CR + + TPP T+P A AAP + PPH
Sbjct: 57 VWRCRVKTSWTPPDSYPDFALPTAPASASAAAAPPRYDRVPPH 99
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 300 PGPADATSPHSPDTCGLALVGPQDQAP 380
PGPA A SPHSP V P P
Sbjct: 70 PGPAAAPSPHSPSPSNAPWVAPAADIP 96
>02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608
Length = 375
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = -1
Query: 412 QLSGLAVSSVVGAWSWGPTSASPQVSGECGEVASAGPGTAQPGRVYV 272
+ +G A + AW+WGP G C A P A +Y+
Sbjct: 185 RFAGSAEAFDPAAWAWGPVQERVLDEGTCPRTCCAAPAPAAGATMYM 231
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 542 TLMRCSSTTFMVLSNFTWTCFLSLSRARRGPAPRSTVP 429
+L RCSST+ + F W S + A R P P P
Sbjct: 118 SLSRCSSTSSRIRKKFAWLRSPSPAPAPRAPTPSEPPP 155
>05_07_0100 + 27679280-27680320
Length = 346
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 442 RGAGPRRARDKLRKQVHVKLDNTMKVVEEQRIRVMEGSWS 561
RGA RR + Q ++D K + +R RVM +WS
Sbjct: 81 RGAAARRRPPRTDVQCKNRVDTLKKKYKAERARVMPSTWS 120
>04_03_1022 - 21778315-21779007
Length = 230
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 268 PQRRPALAAPCQGPLTPPHHIH 333
P PA AP GP PPHH H
Sbjct: 71 PPHTPA-PAPAPGPYIPPHHPH 91
>11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584
Length = 607
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 433 CRFLVTFQLSGLAVSSVVGAWSWGPTSA 350
C LV F++ G ++ + AW WG SA
Sbjct: 494 CHHLVIFRVHGNTLTGNLPAWVWGQQSA 521
>08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754
Length = 203
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 482 FLSLSRARRGPAPR--STVPFPC--NVSAVRVSGVKCRRSL 372
F+ L RR PAPR +T+P C VS+V S CR L
Sbjct: 42 FIELCIGRRSPAPRLSTTLPLACCHRVSSVYRSRWHCRLGL 82
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 264 EPST*TRPGCAVPGPADATSPHSPDTCGLALVGPQDQA 377
E ST T VP P+DAT+P+ + G A P+ A
Sbjct: 307 ERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDA 344
>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
Length = 853
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 424 GNGTVDRGAGPRRARDKLRKQVHV--KLDNTMKVVEEQRIR 540
G G D GAGPRR R R+++ + ++ + VEE R R
Sbjct: 42 GGGGCDLGAGPRRCRWSRRRELALRERVGELEREVEELRRR 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,625,283
Number of Sequences: 37544
Number of extensions: 319668
Number of successful extensions: 1092
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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