Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d20
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical pr...    29   2.4  
X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.    28   4.1  
U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory ...    28   4.1  
U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.        28   4.1  
Z81586-9|CAB04699.2|  676|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL132898-21|CAC14418.2|  617|Caenorhabditis elegans Hypothetical...    28   5.5  
AL132863-12|CAC15862.2|  617|Caenorhabditis elegans Hypothetical...    28   5.5  
AF160189-1|AAD45355.1|  617|Caenorhabditis elegans putative seri...    28   5.5  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AC006663-2|AAF39900.2|  603|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical
           protein K08D12.6 protein.
          Length = 668

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = +3

Query: 177 EHRVSPARVAVPGGTDAHXXXXXXXXXXDEPST*TRPGCAVPGPADATSPHSPDT 341
           + +V+PA  A P   DA             P+    P C    PA A +P + D+
Sbjct: 294 DEQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAAPAATDS 348


>Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical
           protein T02D1.6 protein.
          Length = 433

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 433 CRFLVTFQLSGLAVSSVVGAWSWGPTSAS-PQVSGECGEVASAGPGTAQPGRVYV 272
           C F+++  L    + SV+G W +G T      V G  G +AS    TA     YV
Sbjct: 113 CDFVMSLSLPPAILDSVIGFWIFGTTMCKVHHVFGSVGRIASTFLITAMSFDRYV 167


>X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +1

Query: 142 DNKSFKNYSIKGSTG*VRRVWQCRAERT 225
           DN+ ++NY ++ +TG +  + +C++ERT
Sbjct: 10  DNEHYENYDVEATTG-MNMMEECQSERT 36


>U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory
           abnormality protein4 protein.
          Length = 768

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +1

Query: 142 DNKSFKNYSIKGSTG*VRRVWQCRAERT 225
           DN+ ++NY ++ +TG +  + +C++ERT
Sbjct: 280 DNEHYENYDVEATTG-MNMMEECQSERT 306


>U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.
          Length = 768

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +1

Query: 142 DNKSFKNYSIKGSTG*VRRVWQCRAERT 225
           DN+ ++NY ++ +TG +  + +C++ERT
Sbjct: 280 DNEHYENYDVEATTG-MNMMEECQSERT 306


>Z81586-9|CAB04699.2|  676|Caenorhabditis elegans Hypothetical
           protein T05F1.11 protein.
          Length = 676

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +1

Query: 454 PRRARDKLRKQVHVKLDNTMKVVEEQRI 537
           P R RD+++++V ++ +   ++ EE+R+
Sbjct: 406 PHRTRDEIKREVQMEYERRWRIEEEERL 433


>AL132898-21|CAC14418.2|  617|Caenorhabditis elegans Hypothetical
           protein Y59A8B.14 protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +3

Query: 210 PGGTDAHXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 374
           P G +              PS+ + P CA PGPA     ++T+ +  +T G+A     D 
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588

Query: 375 APTTLDTANP 404
            PT    A P
Sbjct: 589 PPTAAPGAPP 598


>AL132863-12|CAC15862.2|  617|Caenorhabditis elegans Hypothetical
           protein Y59A8B.14 protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +3

Query: 210 PGGTDAHXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 374
           P G +              PS+ + P CA PGPA     ++T+ +  +T G+A     D 
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588

Query: 375 APTTLDTANP 404
            PT    A P
Sbjct: 589 PPTAAPGAPP 598


>AF160189-1|AAD45355.1|  617|Caenorhabditis elegans putative
           serine-threonine kinasePAR-4 protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +3

Query: 210 PGGTDAHXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 374
           P G +              PS+ + P CA PGPA     ++T+ +  +T G+A     D 
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588

Query: 375 APTTLDTANP 404
            PT    A P
Sbjct: 589 PPTAAPGAPP 598


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +1

Query: 211 RAERTHTPPXXXXXXXXTSPQRRPALAAPCQGPLTPP 321
           R     +PP         SPQRRP    P   P  PP
Sbjct: 148 RTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPP 184


>AC006663-2|AAF39900.2|  603|Caenorhabditis elegans Hypothetical
           protein H24K24.4 protein.
          Length = 603

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 356 SGPPRPGSDDT*HR*PGQLKRYK-ETAQSTEAPAPAEPG 469
           + P  P  DD     P ++ R + E   + EAPAP +PG
Sbjct: 398 AAPSEPIPDDPSDAPPAKIPRIEPEPTAADEAPAPEDPG 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,123,513
Number of Sequences: 27780
Number of extensions: 245779
Number of successful extensions: 681
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)