Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d16
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615...    30   1.3  
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502...    30   1.3  
07_03_1267 + 25318220-25318407,25318674-25318844,25319086-253191...    28   5.3  
01_01_0494 + 3651813-3652094,3652692-3652844,3653810-3653924,365...    28   7.0  
02_01_0413 - 3028946-3031111                                           27   9.2  

>06_02_0369 -
           15260013-15260273,15260367-15260516,15261518-15261577,
           15262114-15262241,15262559-15262654,15262655-15263039
          Length = 359

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 119 VNVKFKKLHKIVSCLSILNCRYLYICKYVMNTCNL*LRPL 238
           +N  F K H  ++C S++ C Y YI  + +N  N+  R L
Sbjct: 130 INFTFLKSH-FLACASVVVCLYSYITTFTLNQANVYHRDL 168


>01_01_0660 +
           5029070-5029177,5029303-5029398,5029494-5029556,
           5029836-5029913,5030446-5030614,5030797-5031180,
           5031959-5032042,5032143-5032288,5032810-5033070,
           5033147-5033328,5033421-5033586,5033650-5033703,
           5034702-5034965,5035088-5035303,5035388-5035540,
           5035630-5035827
          Length = 873

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -2

Query: 383 FFIYNIREHFLNFANLITLSCHKNKIHKDQTSKIRSILCSRHYFSNKKLA---DEARDYR 213
           +F+ N   ++LNFANL     H +++ + + S IRS L     FS+  LA   D+  +YR
Sbjct: 493 WFMDNEFVNYLNFANL----SHLSRLTRSEWSTIRSSLGKPRRFSDHFLAAEKDKLENYR 548

Query: 212 YSLHTY 195
             +  Y
Sbjct: 549 KKVRQY 554


>07_03_1267 +
           25318220-25318407,25318674-25318844,25319086-25319188,
           25319394-25319885,25320723-25321156,25321333-25321388,
           25321711-25321775,25322139-25322147
          Length = 505

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 362 EHFLNFANLITLSCHKNKIHKDQ--TSKIRSILCSRHYFSNKKLADEARDYR 213
           E +  +A  +  S  K+  HK     +K+R+ +CSR  ++  K + EA+  R
Sbjct: 191 EFYNKYAGHVGFSVRKSTSHKSSGNITKVRTFVCSREGYNRDKKSLEAKKPR 242


>01_01_0494 +
           3651813-3652094,3652692-3652844,3653810-3653924,
           3654028-3654695
          Length = 405

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 317 KNKIHKDQTSKIRSILCSRHYFSNKKLADEARD 219
           K KIH+D+ + + +++C  + F  K+L    +D
Sbjct: 336 KKKIHRDKETGLHAVVCYAYLFIGKELHIRVQD 368


>02_01_0413 - 3028946-3031111
          Length = 721

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 383 FFIYNIREHFLNFANLITLSCHKNKIHKDQTSKIRSI 273
           +FI  I E   + +NL  L    NK+H + T KI ++
Sbjct: 362 YFIGTIPESIYSCSNLTWLRLSTNKLHGELTKKIENL 398


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,677,709
Number of Sequences: 37544
Number of extensions: 224897
Number of successful extensions: 408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)