Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d15
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    57   3e-09
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    33   0.060
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    29   0.74 
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.7  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   2.3  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   4.0  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    26   5.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    26   6.9  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   6.9  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   6.9  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   6.9  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   6.9  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   6.9  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   6.9  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    25   9.2  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 55/197 (27%), Positives = 83/197 (42%), Gaps = 12/197 (6%)
 Frame = +2

Query: 194 NKNTKYFSFQGIPYAKPPVGARRFXXXXXXXXXXXXFYAYEEGPA-CPSRDITYGSITVK 370
           N   K   F GI YAKPPVG  R+               Y +    CP          V+
Sbjct: 13  NGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVR 72

Query: 371 RKGMS--ENCIYANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSGNRDLH-GPEL 541
                  E+C++ N++VPA      ++  E    P+L  IHGG  Q G+        P+ 
Sbjct: 73  NPDFKYDEDCLFLNIWVPAG-----EKPAE--GWPVLYFIHGGWLQVGNPLHYRQCDPQD 125

Query: 542 LMLKD----VIVVNFNYRLAIFGYLS----LASHKIPGNNGLRDMVTLLKWVQRNAKVFG 697
           L         I+V+  +RL +FG+L+    L       N G  D    L+W  ++ + FG
Sbjct: 126 LQADGSPAKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFG 185

Query: 698 GDPKRVTILGESAGAAS 748
           G+ + + + G SAG+ S
Sbjct: 186 GNKENIAVGGISAGSYS 202


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 32.7 bits (71), Expect = 0.060
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 620 KIPGNNGLRDMVTLLKWVQRNAKVFGGDPKRVTILGESAGAA 745
           K P ++ +  +   + W+  NA  +  DP+R+  LGE  GA+
Sbjct: 230 KFPLSDAVEFVSLCVDWIVENAIYYDADPERIFFLGEDTGAS 271


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 647 DMVTLLKWVQRNAKVFGGDPKRVTIL-GESAGAASVHLL 760
           D +   KWV  N +  G +PKR   L G SAG   V +L
Sbjct: 143 DAIDSFKWVASNIEKLGANPKRGFFLGGASAGGNFVSVL 181


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 302 FYAYEEGPACPSRDITYGSI---TVKRKGMSENCIYANVFVPASATLNSDELCEDNSLPI 472
           F   E+     ++DI+Y S+   + KR+G+S   I AN   P   + NS  +      PI
Sbjct: 125 FEGEEQSSTGNNQDISYSSVNSLSPKRRGISLMSIDANKLSPKKTSPNSGYITSPLRHPI 184

Query: 473 LVN 481
           L++
Sbjct: 185 LLS 187


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 590 IFGYLSLASHKIPGNNGLRDMVTLLKWV 673
           I GYLSL+  K  GN+ +     LL WV
Sbjct: 50  ISGYLSLSKSKALGNSSVAGSDILLSWV 77



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 195 FALSSLPHTGPESNFTSTS 139
           F +  LPH  P+S FT T+
Sbjct: 489 FQIEDLPHPDPQSTFTGTN 507


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 289 WLKWLQFRKSSGAYGWL 239
           WL WL F KSS    WL
Sbjct: 193 WLSWLSFSKSSPVVLWL 209


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
 Frame = -2

Query: 535 RSMQISIARSCLEPTTVDI----HQYGQ*IVFAKFIAVQSRRRRYKYISINTVFTHS 377
           R  +I+++ S + PT+VDI      + + IV  +F  VQS  R Y YIS+  V THS
Sbjct: 48  RRSKIALS-SFIIPTSVDILVKVAGFQRYIVNVEFSNVQSYFRYYNYISLYFV-THS 102


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 28   DCVSTISDSTMFYTVSSVTLILIGVFSDICRVL 126
            +C+S + D T    VS+V L LI     ICR++
Sbjct: 2754 ECLSALRDHTSITHVSTVLLPLIESLMVICRLV 2786


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 200 FCLRSPLSRTQVPSLTSPAHHIF 132
           FCL  P+  T +PS  S   H+F
Sbjct: 310 FCLYLPIPLTSIPSTPSIRSHVF 332


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 415 YKYISINTVFTHSFAFDGNTAVSNISRRTGRPFFVS 308
           Y+YIS N V+  + A       S I+  T   FF +
Sbjct: 98  YEYISFNKVYEIALALGSGLVASGITSETTMLFFAA 133


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 727 SEYCHSLRVSPEYFCISLHPL*QRHHVSQSIITRNLMRSKRQVSENGQSVIKIY 566
           S Y   L V   Y C+ +  L    HV ++ I  N+ R    V    +SVIK Y
Sbjct: 441 SLYVTVLCVLAPYRCLGIGSL-LIDHVKKTAINNNIDRISLHVQTTNESVIKWY 493


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 246 GGFAYGMPWKLKYLVFLFALSSLPHTGPESNFTSTSHFL 130
           GGF YG+   ++  +FLF    +    P ++  S   F+
Sbjct: 85  GGFMYGVGGTIQITLFLFLAIQIKKKAPAAHTVSECFFI 123


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 142 CAGEVRLGTCVRERGERKQKYQI 210
           CAGE+ L  C+++  ER  K +I
Sbjct: 607 CAGEIHLERCLKDLRERFAKIEI 629


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 766 QHEKVY*CCSSTFSEYCHSLRVSPEYFCISLHPL*QRHHVSQSIITRNLMRS 611
           Q+ ++   CS   S     L+  P+Y  ISL  L    H+S++ I   + RS
Sbjct: 523 QNPQLLKTCSQLLSSCSCFLQNHPQYLNISLPVLFDALHISETSIQMTVSRS 574


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 451  RRQFTAHIGEYPRWWV 498
            R QF  H G+ P WW+
Sbjct: 1477 RSQFLHHFGKNPSWWL 1492


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 371 RKGMSENCIYANVFVPASATLNSDELCEDNSLPILVNI 484
           RKG     I A    P     +   LCEDN++P L  +
Sbjct: 66  RKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTV 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,340,711
Number of Sequences: 5004
Number of extensions: 72585
Number of successful extensions: 220
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)