Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d14
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.0  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   7.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/56 (17%), Positives = 25/56 (44%)
 Frame = +2

Query: 272 FISISNLRFTIFVFKIRYRFETSSHRSVLSEATSNLFIFKLVIGMLLVQLYFKVTI 439
           F+S       +++F       T S+  V++ A SN  +   +   +++  Y++  +
Sbjct: 64  FVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMSPPMVINCYYETWV 119


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 585 NCQYSSKYC 611
           NC Y++KYC
Sbjct: 49  NCTYATKYC 57


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/56 (16%), Positives = 26/56 (46%)
 Frame = +2

Query: 272 FISISNLRFTIFVFKIRYRFETSSHRSVLSEATSNLFIFKLVIGMLLVQLYFKVTI 439
           F+S+      +++F       T S+  V++ A S+  +   +   +++  Y++  +
Sbjct: 30  FVSVMGNGMVVYIFLSTKSLRTPSNLFVINLAISDFLMMFCMSPPMVINCYYETWV 85


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 281 ISNLRFTIFVFKIRYRFETSSHRSVLSEATSNLFI 385
           I+  R ++F    +Y   + +H+S+  EA SNL++
Sbjct: 229 INGRRASLFCGLQKYT-RSFAHQSINKEARSNLYL 262


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 281 ISNLRFTIFVFKIRYRFETSSHRSVLSEATSNLFI 385
           I+  R ++F    +Y   + +H+S+  EA SNL++
Sbjct: 224 INGRRASLFCGLQKYT-RSFAHQSINKEARSNLYL 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,853
Number of Sequences: 438
Number of extensions: 2608
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)