Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d07
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    25   0.63 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.6  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -2

Query: 335 RYVEIEFHIINDVCSIKRALHFVT---SRMLFAA--LLQVYVHPVVFYYMRLLVWACYHL 171
           R +E +F  +N + S    L  V    S+++F    + ++Y H ++   +  L+W  Y +
Sbjct: 192 RIIEADFSKLNHLLSGTENLDLVLPIYSQLVFMCKKINKLYGHQLLLTILTYLIWTIYEM 251

Query: 170 IRLRV 156
             L +
Sbjct: 252 YHLAI 256


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 280 HCTLLQAGCCLRHFCRCMCIL*CSTICAFS 191
           +C L+    C+ +FCR   I      CAFS
Sbjct: 289 YCALIIL-LCIYYFCRAFIIFPTHFYCAFS 317



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 657 ITYFQCITV*VTIHQLF 707
           I YF C+++   +H LF
Sbjct: 56  IYYFYCVSITFNVHLLF 72



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 275 HFVTSRMLFAALLQVYVHPVVFYYMRLLVWACYHLI 168
           +F  + +LF   L + V    FYYM LL + C  +I
Sbjct: 240 YFYYAFILFTVHLLLLVCIYYFYYMHLL-FCCAFII 274


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 328 WKSSSTSLTTCVASNGH 278
           W SS    TTC   NG+
Sbjct: 686 WTSSDNPCTTCFCENGN 702


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,534
Number of Sequences: 336
Number of extensions: 3346
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)