Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d07
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    31   0.17 
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.8  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   3.7  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    26   4.8  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    26   6.4  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   8.0  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   8.5  

>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 171 QMITCPYEKAHIVEHYRMHIHLQKC 245
           + I CPY+  H +  +R+  HL++C
Sbjct: 53  KQIPCPYDHKHTIVRHRLEYHLKRC 77



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 270 KVQCPFDATHVVNDVELDFHVTVCPKRHMLDTQLYITDD 386
           ++ CP+D  H +    L++H+  C  R +  T  Y   D
Sbjct: 54  QIPCPYDHKHTIVRHRLEYHLKRCNARPVERTDPYYKKD 92


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 320 EFHI---INDVCSIKRALHFVTSRMLFAALLQVYVHPVVFYYMRLLVWACYHL 171
           ++H+   + D+CS    L F    +LFA L +VY   +  Y + L+++  + +
Sbjct: 138 QYHVGATVGDLCSATFLLGFAAGSVLFAPLSEVYGR-LPLYSVTLVIFVVFQI 189


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 393 RPTVEVHATPVLPSDENWDDETSTSYIPDPSK 488
           R +V   A P+  +  +  DET TS+ PDP++
Sbjct: 259 RLSVRSPAHPIYQTQHSHYDETPTSHHPDPAR 290


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 368 LCVQHVTFRAHRYVEIEFHIINDVCSIKRA 279
           +C  +V  R H  ++ E+H+I   C  + A
Sbjct: 219 MCKNNVLPREHEIIQTEYHVIKTDCEAEMA 248


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 482 IEEGRPYNNKS*RLDPLREAESEEGIDKDLQTIRIDLT*TCKF 610
           +E+ +P+ N    L PL+ A  E   D+ L T+R D+  + KF
Sbjct: 398 LEQEKPFLNSIKHL-PLKRATIEPLSDQALSTLRSDIEKSSKF 439


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 23.0 bits (47), Expect(2) = 8.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 306 NDVELDFHVTVCPKRHMLDTQLYITDDEYRPTVE 407
           N  E++F     P+     +Q+Y+ D+ Y P V+
Sbjct: 149 NSEEVNFQSYQDPRLLPRTSQMYMPDNNYSPAVK 182



 Score = 20.6 bits (41), Expect(2) = 8.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 384 DEYRPTVEVHATPVLPSDENWDDETST 464
           +EY P+V +  +PV     N    +ST
Sbjct: 220 EEYSPSVSLPTSPVAEESYNNVQRSST 246


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 129 FQKMEVTIANPKPNQMITCPY--EKAHIVEHYRMHIHLQK 242
           FQ +E   A      M  C Y  EK  + + Y+M +HL+K
Sbjct: 86  FQTIESLGAEKYSVTMEPCTYTDEKFEVFKKYQMQVHLEK 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,626
Number of Sequences: 5004
Number of extensions: 53645
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)