Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d07
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0073 + 786594-786786,787571-787603,787814-788005,788176-78...    29   2.9  
03_06_0649 - 35289996-35290436                                         28   6.7  
03_06_0350 - 33306753-33307060,33307133-33307193,33307283-333074...    28   6.7  

>04_01_0073 +
           786594-786786,787571-787603,787814-788005,788176-788903
          Length = 381

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -3

Query: 343 GHTVTWKSSSTSLTTCVASNGHCTLLQAGCCLRHFCRC 230
           G  + W  +S     CVAS G CT    G  LR  C C
Sbjct: 21  GFLLDWAGASGDCPKCVASGGQCTY---GDGLRFACNC 55


>03_06_0649 - 35289996-35290436
          Length = 146

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 144 VTIANPKPNQMITCPY---EKAHIVEHYRMHIHLQKCRKQHPACNKVQCPFDATHV 302
           +T+A P+    I+C     +++H   + R+   L++ R+QHPA       + A H+
Sbjct: 1   MTLARPEDRDNISCAATVNQQSH-AHNRRLQASLRRLRRQHPAAVIAYADYYAAHL 55


>03_06_0350 -
           33306753-33307060,33307133-33307193,33307283-33307458,
           33307551-33307608,33307730-33307834,33307924-33307981,
           33308072-33308238
          Length = 310

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 372 YITDDEYRPTVEVHATPVLPSDENWDDETSTSYIPDPSKKG 494
           Y T   Y  TVE     V P+ E W+ +       D +KKG
Sbjct: 166 YATVLTYLSTVEKGGETVFPNAEGWESQPKDDSFSDCAKKG 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,268,226
Number of Sequences: 37544
Number of extensions: 350891
Number of successful extensions: 841
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)