Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d06
         (273 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...   101   5e-23
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    31   0.11 
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    31   0.11 
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    29   0.34 
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    28   0.79 
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical ...    27   2.4  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    27   2.4  
AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical ...    26   3.2  
AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical...    25   5.5  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical...    25   7.3  
AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical...    25   7.3  
AL022716-3|CAA18771.1|  272|Caenorhabditis elegans Hypothetical ...    25   7.3  
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    25   7.3  
Z83114-4|CAB05554.4|  739|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...    25   9.7  
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p...    25   9.7  
AF026214-7|AAP68943.1|  640|Caenorhabditis elegans Hypothetical ...    25   9.7  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score =  101 bits (243), Expect = 5e-23
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = +3

Query: 60  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 227
           MG  N+W+SHPR++G GSRSCR C+  HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 120 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 221
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 120 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 221
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 119 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 220
           M I + + WL+P ++F+H+    Q +   H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 119 MPILLQQAWLNPQVRFEHMQTVLQRV 196
           + +L  Q W +P++RF+H+   LQ +
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCLQNL 105


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 107 RISVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 208
           RI   P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical
           protein R11E3.4 protein.
          Length = 747

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 54  LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 161
           LK   A  W+ +P+R G  +R  C SC     ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 162 RTCGLSHACWSRIGMTEILVRICEGEN 82
           R C ++H C+S +   E +   CEGEN
Sbjct: 40  RVCPVAH-CYSSLTAPEPMTSTCEGEN 65


>AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.9 protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 143 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPS 6
           M   A S  PR+  +  +    N     + +LNC S+T ++ ++P+
Sbjct: 93  MKTAAASTCPRTCGLCCQTEAYNCPNVAYPRLNCASITLSQCNSPA 138


>AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical
           protein Y41C4A.9 protein.
          Length = 577

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 17  LICCSLARNNLIS*N-GPRKYLVFSPSQIRTRISVMPILLQQAWLNPQVRFEHMQT 181
           L+C  L    +++ + G   +L+ S +   T +    I+LQQ W N Q+ F H+ +
Sbjct: 282 LVCSPLGLRMILNGDDGNEAHLISSINM--TIVDRTDIMLQQNWENLQLIFSHLHS 335


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 153 RKYGLNICRQCFREYAHDIGFK 218
           R YGL +C  C R +  + GF+
Sbjct: 234 RAYGLYVCTTCQRRFRDNKGFQ 255


>Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical
           protein C35A5.4 protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 116 PRSLSVSARVRIPN-ICV-AHFKKLNCFS 36
           PR  SV+A +R+PN +C+  + +  N +S
Sbjct: 113 PRQTSVNAAIRMPNSVCIQVYHRPYNAYS 141


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 34  SEKQFNFLKWATQIFGILTLADTDKDLGH 120
           + ++FNFLKW ++ F  L +      + H
Sbjct: 148 NRERFNFLKWGSKAFDNLLIVPPGSGIVH 176


>AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 113 SVMPILLQQAWLNPQVRFEH 172
           S M IL  Q W +P + FEH
Sbjct: 131 STMHILFSQIWHDPGLSFEH 150


>AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 113 SVMPILLQQAWLNPQVRFEH 172
           S M IL  Q W +P + FEH
Sbjct: 131 STMHILFSQIWHDPGLSFEH 150


>AL022716-3|CAA18771.1|  272|Caenorhabditis elegans Hypothetical
           protein C24F3.2 protein.
          Length = 272

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 168 SNRTCGLSHACWSRIGMTEILVRICEGENTKYLR 67
           S  TC +SH C +++G        C G N K++R
Sbjct: 223 SGATCSVSHTCGAKLGTFIASGSKCNGCN-KFVR 255


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 174 CRQCFREYAHDIGFKK 221
           C  CF+EYAH  G  +
Sbjct: 330 CAICFKEYAHQAGLSE 345


>Z83114-4|CAB05554.4|  739|Caenorhabditis elegans Hypothetical
           protein K09B11.10 protein.
          Length = 739

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = -1

Query: 270 FFYLKVKFIIPTPFSPAS*ILCHEHTL*STVCICSNRTCGLSHACWSRIG 121
           F +L V    P P+S          TL S V  CS RT  LS   W + G
Sbjct: 306 FLFLAVDSFSPRPYS----------TLTSQVIPCSQRTTSLSLKYWMKTG 345


>Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical
           protein T02C12.2 protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 138 RHGLIRKYGLNICRQCFREYAHDIGFK 218
           RH L+     + CR CF+E+ +  G K
Sbjct: 362 RHELLPNTYTHFCRTCFQEFNYVHGVK 388


>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 108 GSRSCRSCSNRHG-LIRKYGLNICRQC 185
           GSR+      R G LI +  LN+CRQC
Sbjct: 326 GSRTPALSRVREGVLIAELDLNLCRQC 352


>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
           protein 36 protein.
          Length = 1249

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 1   DLEGVSNLLLVSEKQFNFLK 60
           D+E  SNL+   + QFNF+K
Sbjct: 799 DMEATSNLIDSWDTQFNFMK 818


>AF026214-7|AAP68943.1|  640|Caenorhabditis elegans Hypothetical
           protein F52H2.1 protein.
          Length = 640

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 129 CSNRHGLIRKYGLNICRQCFREYAHD 206
           C     L    G+NI R CF  Y H+
Sbjct: 164 CVGYAKLFLNLGVNIVRVCFGHYGHE 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,217,003
Number of Sequences: 27780
Number of extensions: 120738
Number of successful extensions: 313
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)