Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d06
         (273 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   0.52 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   0.52 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   0.52 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   0.52 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   4.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   4.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   6.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   8.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 0.52
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 86  SPSQIRTRISVMPILLQQAWLNPQVRFEH 172
           SP +   +  V   LLQQ W +P++R+ +
Sbjct: 99  SPDESSLKYEV-EFLLQQQWYDPRLRYSN 126


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 0.52
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 86  SPSQIRTRISVMPILLQQAWLNPQVRFEH 172
           SP +   +  V   LLQQ W +P++R+ +
Sbjct: 99  SPDESSLKYEV-EFLLQQQWYDPRLRYSN 126


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 0.52
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 86  SPSQIRTRISVMPILLQQAWLNPQVRFEH 172
           SP +   +  V   LLQQ W +P++R+ +
Sbjct: 150 SPDESSLKYEV-EFLLQQQWYDPRLRYSN 177


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 0.52
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 86  SPSQIRTRISVMPILLQQAWLNPQVRFEH 172
           SP +   +  V   LLQQ W +P++R+ +
Sbjct: 99  SPDESSLKYEV-EFLLQQQWYDPRLRYSN 126


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 71  KYLVFSPSQIRTRISVMPILLQQAWLNPQ 157
           KYL+F+   +   I V  ++L   + +PQ
Sbjct: 309 KYLIFAMILVSISICVTVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 71  KYLVFSPSQIRTRISVMPILLQQAWLNPQ 157
           KYL+F+   +   I V  ++L   + +PQ
Sbjct: 309 KYLIFAMILVSISICVTVVVLNVHFRSPQ 337


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 165 LNICRQCFREYAHDIGFKKL 224
           LN+  Q    Y+H + FK L
Sbjct: 453 LNLAAQKREYYSHYVAFKSL 472


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 128 LLQQAWLNPQ 157
           LLQ  WL+P+
Sbjct: 339 LLQNTWLDPE 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,586
Number of Sequences: 438
Number of extensions: 1534
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)