Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d03
         (367 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   3.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   3.9  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   5.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   5.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   5.2  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   5.2  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    20   9.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   9.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    20   9.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 150  PKITTLMETATNLSTTVHITWT 215
            P++TT ++T  + +  +H  WT
Sbjct: 1015 PQVTTGVDTGASSTEHMHPDWT 1036


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 131 PYIVNPPKDYNPNGNGYE 184
           P+IV  P++ NP+   Y+
Sbjct: 192 PFIVRVPEEDNPHAKLYD 209


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 82  GYGQRSRKRLRTY*QPPVH 138
           GYG     +L ++  PP+H
Sbjct: 80  GYGNYYHPQLHSHHGPPIH 98


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 82  GYGQRSRKRLRTY*QPPVH 138
           GYG     +L ++  PP+H
Sbjct: 80  GYGNYYHPQLHSHHGPPIH 98


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 82  GYGQRSRKRLRTY*QPPVH 138
           GYG     +L ++  PP+H
Sbjct: 80  GYGNYYHPQLHSHHGPPIH 98


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 82  GYGQRSRKRLRTY*QPPVH 138
           GYG     +L ++  PP+H
Sbjct: 80  GYGNYYHPQLHSHHGPPIH 98


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 260 KIFFTSHREHQGKGEGPRNMH 198
           KI+F +HR    + +  + MH
Sbjct: 85  KIWFQNHRYKTKRAQHEKGMH 105


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 4  NFNIFACD 27
          ++NIFACD
Sbjct: 49 HYNIFACD 56


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 4  NFNIFACD 27
          ++NIFACD
Sbjct: 49 HYNIFACD 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,713
Number of Sequences: 336
Number of extensions: 2032
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7510735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)