Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d03
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   3.7  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   3.7  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   4.9  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   4.9  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   4.9  
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    25   4.9  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    24   6.4  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   6.4  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    24   6.4  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    24   6.4  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    24   8.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    24   8.5  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    24   8.5  

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 139  DVRAVVNRFVAVSLSVG-HSQQSEDENHEEF 50
            +VR V NRFVAV L  G       DE  ++F
Sbjct: 1056 NVRRVTNRFVAVKLDCGIDGNIKADEVSDDF 1086


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 366 FFFKHYNMFIYLFR*HKFI*NFEI 295
           FF K Y+ F+++FR + FI +FE+
Sbjct: 188 FFLKQYHNFMFVFRDY-FIRDFEL 210


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 19/69 (27%), Positives = 25/69 (36%)
 Frame = +2

Query: 17  SPVITRDHIKMKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDN 196
           +P+    H    F+     A  A+ N   N Y PI   PY  N      PN     PI  
Sbjct: 388 TPLTAPIHATESFWPSAAAAAAAVHN-NANSYMPITPTPYPNNAKIFGYPNQPPLTPIPF 446

Query: 197 GAYYVDPPP 223
             + + P P
Sbjct: 447 TGFVLHPAP 455


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -1

Query: 274  VINFLRYSLLPTASTRERGRVHVI 203
            ++NFL++S +PT S ++R  VH++
Sbjct: 1179 ILNFLKFSGIPTQS-KKRLEVHML 1201


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 363 FFKHYNMFIYLFR*HKFI*NFEIYC*YIISLL 268
           FF  YN FI+ F+   FI ++     Y+I +L
Sbjct: 470 FFNGYNAFIHGFKYRSFITSYIGIAAYVIMIL 501


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 75  LCWLWPTLKETATNLLTTARTS 140
           + W W TL  TA  +L+TA  S
Sbjct: 1   MIWFWSTLLVTAIAVLSTANES 22


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 119 IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 205
           +++ PY+ N   D+N NGN   P+   +Y
Sbjct: 370 VNSMPYLSNG--DHNNNGNTSSPVSRFSY 396


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 155 DYNPNG-NGYEPIDNGAYYVD 214
           DYN N  N Y PI N  Y+++
Sbjct: 119 DYNNNRKNFYPPIQNSTYFIN 139


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 98  QGNGYEPIDNRPYIVNPPKDYNPNGNGY 181
           QG G +  D  PY ++P   Y P G  Y
Sbjct: 186 QGAGVKA-DINPYNLSPYSQYGPEGTAY 212


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 71  LALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY 205
           LAL ++   Q   Y  I+  P   N P  +N N N +  I   AY
Sbjct: 86  LALESLKGIQSKWYGYIEYLPKTFNTPLYFNENDNAF-LISTNAY 129


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 56  FMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKD-YNPNGNGY--EPIDNGAYYVDPPP 223
           F+ F+L    + +AQ NGY P +     +  PKD Y   G  +  E  ++ A  ++P P
Sbjct: 7   FLYFLLT--CVVSAQFNGYVPPEQNGGDIVVPKDFYEKFGEDFIREQEESSAPLMNPVP 63


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +2

Query: 104  NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPPFPGAR 238
            N Y PI      VNP   Y P+G        G+  V PP  P  R
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHG--------GSQIVPPPKQPANR 1018


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 121 NRFVAVSLSVGHSQQSEDENHE 56
           NRF+ + L VG + ++  +NH+
Sbjct: 190 NRFLPIVLDVGTNNETHRKNHQ 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,989
Number of Sequences: 5004
Number of extensions: 31914
Number of successful extensions: 96
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)