Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d03
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988...    33   0.091
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697...    31   0.28 
01_03_0005 + 11568545-11569119,11569179-11569191                       29   1.1  
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440...    27   3.4  
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    27   4.5  
03_06_0471 + 34169562-34169892,34170121-34170347                       27   4.5  
01_01_0082 + 625198-625719                                             27   4.5  
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611...    26   7.9  

>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
            22798947-22799155,22799240-22800209,22800395-22800465
          Length = 1062

 Score = 32.7 bits (71), Expect = 0.091
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 178  AVSIRVVIFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHRRK 14
            A  I  +++G ++D     ++F+ +S       QS+DEN +  H  +  +YH +K
Sbjct: 985  ACDIIRILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYHSKK 1039


>02_02_0119 +
           6978697-6979045,6979519-6979581,6979757-6979866,
           6979969-6980154,6980266-6980361,6980493-6980564,
           6980798-6980909,6982448-6982534,6982680-6983872
          Length = 755

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 116 PIDNRPYIVNPPKDYNPNGNG-YEPIDNGAYYVDPPPFPGA 235
           P +  PY   PP    P G G Y    N   Y  PPP+PGA
Sbjct: 641 PPNTSPYGQAPPPGSAPGGYGQYGYSQNQQGYGAPPPYPGA 681


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 143 NPPKDYNPNGNGYEPIDNGAYYVDPPPFPGARGG 244
           +PP  Y+  G G      G YY  PPP  G  GG
Sbjct: 92  SPPPPYSGGGGGSSTGGGGIYY--PPPTGGGGGG 123


>09_04_0684 -
           19442335-19442990,19443774-19443839,19443935-19444032,
           19444787-19445157
          Length = 396

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 146 PPKDYNPNGNGYEPIDNGAYYVDPPPFPGARGG 244
           PP  Y  N  GY+    G    +PPP+ G   G
Sbjct: 326 PPSAYQGNNPGYQGGGPGYQGGNPPPYQGGNPG 358


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 20  PVITRDHIKMKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 187
           PV  + +     FMI+  ++L + N    G  P+D+  Y+ + P DY      Y+P
Sbjct: 474 PVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYL-DLPVDYMDLFKLYDP 528


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
 Frame = +2

Query: 110 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY----YVDPPPFPGA 235
           Y P    P    PP  Y P+  GY P   GAY    Y   P +P A
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPA 98


>01_01_0082 + 625198-625719
          Length = 173

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 101 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 220
           G GY P  +     NP   YNP  +G+    N   Y+ PP
Sbjct: 100 GGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP 135


>02_02_0015 +
           6109552-6109650,6110006-6110078,6111937-6111998,
           6112315-6112376,6112463-6112556,6112673-6113227,
           6113379-6113870,6113967-6114137,6115713-6115817,
           6115903-6116052,6116372-6116498,6116585-6116648,
           6117147-6117203,6117423-6117555,6117660-6117746
          Length = 776

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 116 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPP 223
           PID  P  ++PP+  +P      P  NG   ++PPP
Sbjct: 278 PIDP-PRPIDPPRPIDPPRPIDPPRPNGTRTIEPPP 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,900,529
Number of Sequences: 37544
Number of extensions: 226490
Number of successful extensions: 632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)