Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d03
         (367 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF007192-1|AAC02270.1|  338|Homo sapiens intestinal mucin protein.     30   2.6  
AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellu...    29   4.6  
AF007191-1|AAC02269.1|  589|Homo sapiens intestinal mucin protein.     28   8.0  

>AF007192-1|AAC02270.1|  338|Homo sapiens intestinal mucin protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +3

Query: 87  WPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPLSLVLAVGSKE 254
           WPT   T ++L T   +S  +P         TN++    +  TLP ++  +  + E
Sbjct: 179 WPTATNTLSSLTTNILSSTPVPSTERTTSHTTNINPVSTLVTTLPTTITRSTPTSE 234


>AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellular
           receptor 1 protein.
          Length = 359

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 105 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPLSLVLA 239
           T    +TT RTS  +P  TT+  T    + ++  T T+P ++ ++
Sbjct: 136 TTVPTVTTVRTSTTVPTTTTVPTTTVPTTMSIPTTTTVPTTMTVS 180


>AF007191-1|AAC02269.1|  589|Homo sapiens intestinal mucin protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 90  PTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPLSLVLAVGSKE 254
           PT   T ++L ++  +S ++P    +    TNL+ +  +  TLP ++  +  + E
Sbjct: 400 PTANSTLSSLTSSILSSTLVPSTDMITSHTTNLTRSSPLLATLPTTITRSTPTSE 454


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,722,917
Number of Sequences: 237096
Number of extensions: 1224257
Number of successful extensions: 6316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6294
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2306171440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)