Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3d03
(367 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical p... 32 0.14
Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical pr... 32 0.14
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 31 0.33
Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical pr... 29 1.0
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 1.0
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 1.0
U13070-20|AAN63418.1| 641|Caenorhabditis elegans Hypothetical p... 29 1.3
U13070-18|AAC46635.2| 646|Caenorhabditis elegans Hypothetical p... 29 1.3
AF025471-4|AAB71063.1| 151|Caenorhabditis elegans Hypothetical ... 29 1.3
U40029-3|AAA81124.1| 269|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z81103-7|CAB03211.3| 579|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z81103-5|CAD56592.2| 550|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z81088-12|CAD56587.2| 579|Caenorhabditis elegans Hypothetical p... 27 5.4
U58758-7|AAO38576.1| 220|Caenorhabditis elegans Hypothetical pr... 27 5.4
U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical pr... 27 5.4
U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical pr... 27 5.4
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 27 5.4
Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical pr... 26 7.2
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 26 7.2
AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical ... 26 7.2
AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical ... 26 7.2
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ... 26 7.2
Z82084-4|CAB04980.1| 667|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 26 9.5
AF016448-14|AAB65960.2| 304|Caenorhabditis elegans Hypothetical... 26 9.5
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q... 26 9.5
>Z70753-10|CAD44125.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1a protein.
Length = 296
Score = 31.9 bits (69), Expect = 0.14
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 110 YEPIDNRPYIVN--PPKDYNPNGNGYEPIDNGAYYVDPPPFPGA 235
Y P PY PP +N G+G GAY+ PPP GA
Sbjct: 8 YNPAYQNPYPNQGPPPPGFN-TGDGQNQNQGGAYFSPPPPMHGA 50
>Z70753-1|CAD44126.1| 296|Caenorhabditis elegans Hypothetical
protein F40F9.1b protein.
Length = 296
Score = 31.9 bits (69), Expect = 0.14
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 110 YEPIDNRPYIVN--PPKDYNPNGNGYEPIDNGAYYVDPPPFPGA 235
Y P PY PP +N G+G GAY+ PPP GA
Sbjct: 8 YNPAYQNPYPNQGPPPPGFN-TGDGQNQNQGGAYFSPPPPMHGA 50
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 30.7 bits (66), Expect = 0.33
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 75 LCWLWPTLKETATNLLTTARTSLILPKITT---LMETATNLSTTVHITWTLPLS 227
LC+LW L T T TT T+ + TT + T T T T T+PL+
Sbjct: 179 LCYLWVPLTTTTTTTTTTTTTTSPMNTTTTTVLINGTTTTTVPTNETTTTVPLN 232
>Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 87 WPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWT 215
WP ET TT T+ +P TT+ T T +T T T
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTT 340
>Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 87 WPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWT 215
WP ET TT T+ +P TT+ T T +T T T
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTT 340
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 98 QGNGYEPIDNRPYIVNPPKDYNPNGN-GYEPIDNGAYYVDPPPFP 229
Q Y +NRP+ V PP P + G PI + A PPP P
Sbjct: 594 QAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPP 638
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 98 QGNGYEPIDNRPYIVNPPKDYNPNGN-GYEPIDNGAYYVDPPPFP 229
Q Y +NRP+ V PP P + G PI + A PPP P
Sbjct: 420 QAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPP 464
>U13070-20|AAN63418.1| 641|Caenorhabditis elegans Hypothetical
protein F01F1.1c protein.
Length = 641
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 143 NPPKDYNPNGNGYEPIDNGAYYVDPPPFP 229
NPP Y G G+ P G+ + PPP P
Sbjct: 57 NPPSAYGQFGGGFHPSTWGSGPIVPPPPP 85
>U13070-18|AAC46635.2| 646|Caenorhabditis elegans Hypothetical
protein F01F1.1a protein.
Length = 646
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 143 NPPKDYNPNGNGYEPIDNGAYYVDPPPFP 229
NPP Y G G+ P G+ + PPP P
Sbjct: 62 NPPSAYGQFGGGFHPSTWGSGPIVPPPPP 90
>AF025471-4|AAB71063.1| 151|Caenorhabditis elegans Hypothetical
protein R52.6 protein.
Length = 151
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 102 ETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPLSLV 233
E T ++TT TS + K+ M AT + WTL L V
Sbjct: 51 EETTEMMTTMETSTMTEKVCPEMPAATACMDLTTLGWTLELGEV 94
>U40029-3|AAA81124.1| 269|Caenorhabditis elegans Hypothetical
protein F10G7.6 protein.
Length = 269
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 113 EPIDNRPYI-VNPPKDYNPNGNGYEPIDNG 199
EP D P + V PP + PN NG P NG
Sbjct: 239 EPDDPAPPLPVAPPPLHGPNNNGNGPAQNG 268
>Z81103-7|CAB03211.3| 579|Caenorhabditis elegans Hypothetical
protein M04G12.4a protein.
Length = 579
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +2
Query: 101 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPPFPGARG 241
GN Y+P P +PP Y GY P G P +P G
Sbjct: 95 GNSYDP----PVRFDPPYAYRATATGYMPTVPGLSTNSSPYYPRTSG 137
>Z81103-5|CAD56592.2| 550|Caenorhabditis elegans Hypothetical
protein M04G12.4b protein.
Length = 550
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +2
Query: 101 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPPFPGARG 241
GN Y+P P +PP Y GY P G P +P G
Sbjct: 66 GNSYDP----PVRFDPPYAYRATATGYMPTVPGLSTNSSPYYPRTSG 108
>Z81088-12|CAD56587.2| 579|Caenorhabditis elegans Hypothetical
protein M04G12.4a protein.
Length = 579
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +2
Query: 101 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPPFPGARG 241
GN Y+P P +PP Y GY P G P +P G
Sbjct: 95 GNSYDP----PVRFDPPYAYRATATGYMPTVPGLSTNSSPYYPRTSG 137
>U58758-7|AAO38576.1| 220|Caenorhabditis elegans Hypothetical
protein ZK1127.9d protein.
Length = 220
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 164 PNGNGYEPIDNGAYYVDPPPFPGARGG 244
P GY P G Y V P PGA GG
Sbjct: 95 PGRGGYMPPYRGGYGVAPNGGPGAYGG 121
>U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical
protein ZK1127.9a protein.
Length = 914
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 164 PNGNGYEPIDNGAYYVDPPPFPGARGG 244
P GY P G Y V P PGA GG
Sbjct: 104 PGRGGYMPPYRGGYGVAPNGGPGAYGG 130
>U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical
protein ZK1127.9b protein.
Length = 905
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 164 PNGNGYEPIDNGAYYVDPPPFPGARGG 244
P GY P G Y V P PGA GG
Sbjct: 95 PGRGGYMPPYRGGYGVAPNGGPGAYGG 121
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 26.6 bits (56), Expect = 5.4
Identities = 20/50 (40%), Positives = 20/50 (40%)
Frame = +2
Query: 92 NAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPPFPGARG 241
NAQG P P PP P GN P G Y V PP PG G
Sbjct: 247 NAQGGSSRP--GPPGPAGPP---GPPGNNGAP--GGGYGVGPPGPPGPSG 289
>Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 101 GNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 220
GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 47 GNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 107 GYEPIDNRPY-IVNPPKDYNPNGNGYEPIDNGAYYVDPPPFPG 232
GY P++ P +V +YNP P N Y + PPP PG
Sbjct: 262 GYNPLNPPPPGVVVAAGEYNPEA----PALNN-YSIPPPPIPG 299
>AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 101 GNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 220
GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 47 GNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical
protein Y81G3A.1 protein.
Length = 243
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 101 GNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 220
GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 47 GNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
protein Y69A2AR.19 protein.
Length = 1256
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 44 KMKFFMIFVLALLAMANAQGNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDN 196
KM+F + +LAL +AN + I + R +N +P +G+E ++N
Sbjct: 4 KMRFGQLLLLALFGVANGYREQFNTISSSVRQEKINDNHLDSPRSDGHELMEN 56
>Z82084-4|CAB04980.1| 667|Caenorhabditis elegans Hypothetical
protein ZK1053.4 protein.
Length = 667
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 92 NAQGNGYEPIDNRPYIVNPPKDYNPNGN-GYEPIDNGAYYVDPPPFP 229
N EP + I+ PP Y + + I +GAY + PPP P
Sbjct: 195 NTSSISTEPSPVQTSILKPPPMYPETASFPHRKIRSGAYSLYPPPQP 241
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical
protein T16G1.1 protein.
Length = 695
Score = 25.8 bits (54), Expect = 9.5
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Frame = +2
Query: 92 NAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPPFP 229
N N NRP P DY N NG E NG PP P
Sbjct: 420 NGNNNNNNNNGNRPRRPRPDTDYEENENGCEADLGGSNGGGNGPVPPIP 468
>AF016448-14|AAB65960.2| 304|Caenorhabditis elegans Hypothetical
protein F41E6.12 protein.
Length = 304
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 141 LILPKITTLMETATNLSTTVHITWTLPL 224
LILP +TTL +T STT T T PL
Sbjct: 60 LILPPMTTL-PPSTTTSTTAEPTTTTPL 86
>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 85
protein.
Length = 2203
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = +3
Query: 90 PTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPLSL 230
P + T +N+L I+ +TT+++ L T + T+ S+
Sbjct: 355 PQMVATISNILNATNIDDIISSVTTVLKALLKLQTIKYFTYLFSSSI 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,444,942
Number of Sequences: 27780
Number of extensions: 188301
Number of successful extensions: 561
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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