Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3d01
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...   122   6e-29
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha...    27   2.3  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    27   3.0  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    27   3.9  
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c...    26   6.9  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    25   9.1  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   9.1  

>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score =  122 bits (294), Expect = 6e-29
 Identities = 76/198 (38%), Positives = 110/198 (55%), Gaps = 17/198 (8%)
 Frame = +3

Query: 213 QIDLTQVRIDILQGIRECNSRGLVQTTKWLAEL----NYALRDHKITSEEPSESLNED-- 374
           Q  L ++R  +L+ I EC+ RGLV   +W AE+    N    +H   S  P+   + D  
Sbjct: 17  QEQLREIRNCLLKCISECSERGLVYAVRWAAEMLNGMNPIEMEHIPFSSTPTGEFDLDPD 76

Query: 375 ------ITPEEKDAYTLAKCYFDCQEYDRAAHFLENCTSSKCVFLHKYSLYMSSEKK-RL 533
                 +  EEK+ Y LAK YFDC+E++RAA+ L+NC SSK +FL  YS Y++ EKK   
Sbjct: 77  MANEKLLEVEEKNIYLLAKSYFDCKEFERAAYTLQNCKSSKSIFLRLYSKYLAGEKKSEE 136

Query: 534 DNATDLGTE--NSESNQVLLDLLSFFKT--NSNNLDGYLLYLEGVVLKKLDLRSQAVTVL 701
           +N T L T    S +N+    +    ++     N D YLLYL GVV +K    S+A+  L
Sbjct: 137 ENETLLNTNLTLSSTNREFYYISEVLESLHYQGNKDPYLLYLSGVVYRKRKQDSKAIDFL 196

Query: 702 QASVQAAPTLWAAWIELA 755
           ++ V  AP  W+AW+EL+
Sbjct: 197 KSCVLKAPFFWSAWLELS 214


>SPBC21.04 |med8|sep15|mediator complex subunit
           Med8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 546 DLGTENSESNQVLLDLLSFFKT 611
           D  TE   +NQ+L D+LSF K+
Sbjct: 176 DRATEEQNANQMLTDILSFMKS 197


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 388 SSGVMSSFRDSEGSSEVILWSLKA*FNSASHFVVCTRPRLLHSR 257
           S  + SS ++ + SS+ +       F+S  H V  TRP  LHSR
Sbjct: 62  SPSIKSSSQNGKSSSKGLGGMRSRVFSSQHHGVYHTRPASLHSR 105


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/64 (21%), Positives = 30/64 (46%)
 Frame = +3

Query: 195 HPKSDIQIDLTQVRIDILQGIRECNSRGLVQTTKWLAELNYALRDHKITSEEPSESLNED 374
           H +  ++    + R+ + + +RE   R L +   +  ELN +L + + +S++   S   D
Sbjct: 51  HAQVQLEQQKREERLALRKSLREQRKRELAERLAFSKELNSSLENDEESSQQEDSSSKSD 110

Query: 375 ITPE 386
              E
Sbjct: 111 SEEE 114


>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
 Frame = +3

Query: 333 KITSEEPSESLNEDITPEEK---DAYT-----LAKCYFDC-QEYDRAAHFLENCTSSKCV 485
           K T E+  E+   +  P  +   + YT      A+C  DC ++ D AA  +    +   +
Sbjct: 147 KTTEEQKEEARKTNFVPLVRIHSECYTGETAWSARC--DCGEQLDEAARLISEEGNGVII 204

Query: 486 FLHKYSLYMS-SEKKRLDNATDLGTENSESNQVL 584
           +L +    +  SEK +  N  DLG +  ++N +L
Sbjct: 205 YLRQEGRGIGLSEKLKAYNLQDLGNDTVQANLLL 238


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 375 ITPEEKDAYTLAKCYFDCQEYD 440
           +TP EKD +T   C F+ ++ D
Sbjct: 53  LTPSEKDYFTGGPCEFEVKDLD 74


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 507 YMSSEKKRLDNATDLGTENSESNQVLLDLLSFFKTNSNNLDGYLLYLEGVVL 662
           YM  E +    + +  +  S++ + +  +LSFF + S N+  Y L    +V+
Sbjct: 435 YMGPEVEEDKVSEEAASAKSKNKKGIFSILSFFTSGSKNIGIYSLLSRVLVI 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,059
Number of Sequences: 5004
Number of extensions: 63086
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)