Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3d01
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0182 + 26530799-26530852,26531677-26532927,26533250-265333... 47 2e-05
06_03_1131 + 27872870-27872958,27873036-27873281,27874058-278741... 46 3e-05
11_01_0310 - 2318460-2318573,2318914-2318969,2319374-2319473 30 1.8
01_06_0261 + 27978341-27978391,27978539-27978683,27978794-279788... 30 2.3
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 29 3.1
06_03_1207 + 28418473-28421073 29 4.1
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333... 29 4.1
08_01_0680 - 5958066-5960253,5960707-5961503 28 9.5
07_01_0088 + 684471-685154,685271-685834,685938-686222 28 9.5
>02_05_0182 +
26530799-26530852,26531677-26532927,26533250-26533335,
26533673-26533733
Length = 483
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +3
Query: 510 MSSEKKRLDNATDLGTENSESNQVLLDLLSFFKTNSNN-----LDGYLLYLEGVVLKKLD 674
++ EK++ + +L +SN V +L++ + + + +D + LYL G+VL+
Sbjct: 18 LAGEKRKEEETVELEGSLGKSNAVNQELVALERELATHRRTGAIDSFCLYLYGIVLRDKG 77
Query: 675 LRSQAVTVLQASVQAAPTLWAAWIELAGL 761
+ A TVL SV + P W+AW+EL L
Sbjct: 78 SEALARTVLVESVNSYPWNWSAWLELQSL 106
>06_03_1131 +
27872870-27872958,27873036-27873281,27874058-27874163,
27874665-27875209,27875455-27875914,27876234-27876319,
27877092-27877194
Length = 544
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Frame = +3
Query: 513 SSEKKRLDNATDLGTENSESNQVLLDLLSFFKTNSNN-----LDGYLLYLEGVVLKKLDL 677
+ EK++ + +L +SN V +L++ + + + +D + LYL G+VL+
Sbjct: 148 AGEKRKEEETVELEGSLGKSNAVNQELVALERELATHRRTGAIDSFCLYLYGIVLRDKGS 207
Query: 678 RSQAVTVLQASVQAAPTLWAAWIELAGL 761
+ A TVL SV + P W+AW+EL L
Sbjct: 208 EALARTVLVESVNSYPWNWSAWLELQSL 235
>11_01_0310 - 2318460-2318573,2318914-2318969,2319374-2319473
Length = 89
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 519 EKKRLDNATDLGTENSESNQVLLDLLSFFKTNSNNLDGYLLYLEGVVLKKLD 674
E+ +LDNA + TEN++ V L F K +D +Y+ ++ K LD
Sbjct: 32 EQGQLDNANIISTENTKEAYVEKITLQFLKIQQAQVDVGGIYVSNLLNKLLD 83
>01_06_0261 +
27978341-27978391,27978539-27978683,27978794-27978861,
27979630-27980073,27980163-27980681,27981002-27981214,
27981650-27981805,27982753-27982941
Length = 594
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = +3
Query: 372 DITPE----EKDAYTLAKCYFDCQEYDRAAHFLENCTSSKCVFLH-KYSLYMSSEK--KR 530
D+TP +DAY L +YD+A F+ S + KY+++ S+ KR
Sbjct: 327 DVTPSPVAMSRDAYNLPDFV---TKYDQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKR 383
Query: 531 LDNATDLGTENSESNQVLLDLLSFFKTNSN 620
LDNA L E + FF N++
Sbjct: 384 LDNAFKLAQERVAEKGTKCPMFLFFSVNAS 413
>11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 513 TYTKNICEEKRISNSCSSLKNGQLYRILDSRSSILLMCRH 394
TYTK SN S N +L+R+LD + S++++ H
Sbjct: 957 TYTKGRVFLSMKSNQRSESLNSKLHRLLDRKMSLVILVEH 996
>06_03_1207 + 28418473-28421073
Length = 866
Score = 29.1 bits (62), Expect = 4.1
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Frame = +3
Query: 309 LNYALRDHKITSEEPSESLN----EDITPEEKDAYTLAKCYFDCQEYDRAAHFLENCTSS 476
L Y L D K +EE E LN E TP L Y +++D A SS
Sbjct: 239 LIYGLCDQK--TEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSS 296
Query: 477 KC-VFLHKYSLYMSS--EKKRLDNATDLGTENSESNQVLLDLLSFFKTNSNNLDGY 635
KC + L + ++S +K RL A +L E S +N ++ +++++ ++ +DGY
Sbjct: 297 KCKLDLQVFGKLINSLIKKDRLKEAKELLNEIS-ANGLVPNVITY----TSIIDGY 347
>05_04_0273 +
19632430-19632762,19633109-19633177,19633318-19633374,
19633534-19633597,19633887-19634102,19634761-19634803,
19635267-19635345,19635467-19635559
Length = 317
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 228 QVRIDILQGIRECNSR-GLVQTTKWLAELNYALRDHKITSEEPSESLNEDITPEEKDAYT 404
+ R+D + R+ +R Q + +LA + L HK T E+ +E P+ KD YT
Sbjct: 248 RTRVDGKEFFRQVRNRLSYEQFSAFLANVK-ELNSHKQTREDTLRKADEIFGPDNKDLYT 306
Query: 405 L 407
+
Sbjct: 307 I 307
>08_01_0680 - 5958066-5960253,5960707-5961503
Length = 994
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 156 HIINITNMQPLSMHPKSDIQIDLTQVRIDILQGIRECNSRG 278
H++N ++ + +HP +D +D ++ + + IR SRG
Sbjct: 877 HLLN-KQLRYIQLHPVTDTAVDAERISLAFTEAIRAHTSRG 916
>07_01_0088 + 684471-685154,685271-685834,685938-686222
Length = 510
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 396 HPFPPALCPRSEILKVPRKL 337
H FPPAL P + VPRK+
Sbjct: 338 HVFPPALAPSLSFVGVPRKV 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,191,194
Number of Sequences: 37544
Number of extensions: 348313
Number of successful extensions: 810
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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