Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3d01
(775 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58763-2|AAK68876.1| 673|Caenorhabditis elegans Metaphase-to-an... 41 0.001
U14635-10|AAM81107.1| 552|Caenorhabditis elegans Abnormal dye f... 41 0.001
U14635-9|AAK84493.1| 574|Caenorhabditis elegans Abnormal dye fi... 41 0.001
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 31 0.91
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 31 0.91
Z69883-1|CAA93743.1| 829|Caenorhabditis elegans Hypothetical pr... 29 2.8
U53338-5|AAA96193.1| 463|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF003739-7|AAB58068.1| 339|Caenorhabditis elegans Hypothetical ... 29 2.8
U58750-1|AAB00641.1| 307|Caenorhabditis elegans Hypothetical pr... 29 3.7
U39998-5|AAK71421.2| 408|Caenorhabditis elegans Gustatory recep... 29 3.7
AF039042-11|AAC48251.1| 343|Caenorhabditis elegans Serpentine r... 29 4.9
AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical... 28 8.5
AF038612-2|AAB92044.1| 507|Caenorhabditis elegans Hypothetical ... 28 8.5
>U58763-2|AAK68876.1| 673|Caenorhabditis elegans
Metaphase-to-anaphase transitiondefect protein 3
protein.
Length = 673
Score = 40.7 bits (91), Expect = 0.001
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Frame = +3
Query: 369 EDITPEEKDAYT--LAKCYFDCQEYDRAAHFLENCTSS---------KCVFLHKYSLYMS 515
ED P K +T A+ +E+ RAA FLE + +C+FL Y ++
Sbjct: 138 EDQMPTVKRNHTSRFAQSLIKNKEFRRAAFFLEKTMNGNKLDHFLHFRCLFLAYYQEHLE 197
Query: 516 SEKKRLDNATDLGTENSESNQVLLDLLSFFKTNSNNLDGYLLYLEGVVLKKLDLRSQAVT 695
++ + ++ T E S + +L + K N D + YL G++ +L L+ A
Sbjct: 198 NDAEGIERKTSFAEERSPFS-LLYQRMEDKKLRENE-DVWFEYLMGLLEVELGLKDLAEK 255
Query: 696 VLQASVQAAPTLWAAWIELAGL 761
+ V P +W AW L+ L
Sbjct: 256 SFRNVVIREPRIWPAWEALSRL 277
>U14635-10|AAM81107.1| 552|Caenorhabditis elegans Abnormal dye
filling protein 13,isoform b protein.
Length = 552
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +3
Query: 297 WLAELNYALRDHKITSEEPSESLNEDITPEEKDAYTLAKCYFDCQEYDRAAHFLENCTSS 476
WLA Y LR+++ + + +N+D P E Y LA C F ++Y A E C +
Sbjct: 40 WLAHCYYRLRNYEEAANVYTFLMNKDDAPAELGVY-LACCKFYLKQYIEAKSIAEKCPKT 98
Query: 477 K-CV-FLHKYSLYMSSEKKRLDNATDLG 554
C+ + SL ++ EK+ L + LG
Sbjct: 99 PLCIRLMMNVSLRLNDEKRILTFHSSLG 126
>U14635-9|AAK84493.1| 574|Caenorhabditis elegans Abnormal dye
filling protein 13,isoform a protein.
Length = 574
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +3
Query: 297 WLAELNYALRDHKITSEEPSESLNEDITPEEKDAYTLAKCYFDCQEYDRAAHFLENCTSS 476
WLA Y LR+++ + + +N+D P E Y LA C F ++Y A E C +
Sbjct: 62 WLAHCYYRLRNYEEAANVYTFLMNKDDAPAELGVY-LACCKFYLKQYIEAKSIAEKCPKT 120
Query: 477 K-CV-FLHKYSLYMSSEKKRLDNATDLG 554
C+ + SL ++ EK+ L + LG
Sbjct: 121 PLCIRLMMNVSLRLNDEKRILTFHSSLG 148
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 31.1 bits (67), Expect = 0.91
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +3
Query: 324 RDHKITSEEPSESLNEDITPEE-KDAYTLAKCYFDCQEYDRAAHFLENCTSSKCVFLHKY 500
R HKI+++ D+ D L + Y +C E++R A +E + + H
Sbjct: 909 RQHKISNDYRELKRLADVRRRLLSDNIKLLRFYRECDEFERWAKEIEVSLADEPSPEHVA 968
Query: 501 SLYMSSEKKRLDNATDLGTENSESNQVLLDLLS 599
+ +K D T+ GT+ N + DL+S
Sbjct: 969 AFRRKFDKLEADMKTNGGTQLKHINDIANDLIS 1001
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 31.1 bits (67), Expect = 0.91
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +3
Query: 324 RDHKITSEEPSESLNEDITPEE-KDAYTLAKCYFDCQEYDRAAHFLENCTSSKCVFLHKY 500
R HKI+++ D+ D L + Y +C E++R A +E + + H
Sbjct: 909 RQHKISNDYRELKRLADVRRRLLSDNIKLLRFYRECDEFERWAKEIEVSLADEPSPEHVA 968
Query: 501 SLYMSSEKKRLDNATDLGTENSESNQVLLDLLS 599
+ +K D T+ GT+ N + DL+S
Sbjct: 969 AFRRKFDKLEADMKTNGGTQLKHINDIANDLIS 1001
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 31.1 bits (67), Expect = 0.91
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +3
Query: 324 RDHKITSEEPSESLNEDITPEE-KDAYTLAKCYFDCQEYDRAAHFLENCTSSKCVFLHKY 500
R HKI+++ D+ D L + Y +C E++R A +E + + H
Sbjct: 909 RQHKISNDYRELKRLADVRRRLLSDNIKLLRFYRECDEFERWAKEIEVSLADEPSPEHVA 968
Query: 501 SLYMSSEKKRLDNATDLGTENSESNQVLLDLLS 599
+ +K D T+ GT+ N + DL+S
Sbjct: 969 AFRRKFDKLEADMKTNGGTQLKHINDIANDLIS 1001
>Z69883-1|CAA93743.1| 829|Caenorhabditis elegans Hypothetical
protein C27C12.7 protein.
Length = 829
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 441 RAAHFLENCTSSKCVFLHKYSLYMSSEKKRLDNATDLGTENSESNQ 578
+A ++ N +S+ V++H Y+LY + ++ D A L S N+
Sbjct: 202 QAFYWNPNASSNDFVYVHNYNLYYQKDPEKPDGAIQLTVGGSTFNR 247
>U53338-5|AAA96193.1| 463|Caenorhabditis elegans Hypothetical
protein C05E11.7 protein.
Length = 463
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 186 LSMHPKSDIQIDLTQVRIDILQGIRECNSRGLV-QTTKWLAELN 314
LS+ + Q+D + ++ +ECNSRGL+ W++E N
Sbjct: 119 LSLPASTGCQLDDNEYGKQVISCKKECNSRGLICMMRTWISEQN 162
>AF003739-7|AAB58068.1| 339|Caenorhabditis elegans Hypothetical
protein M01D7.1 protein.
Length = 339
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 621 YW-SWF*RKTISPKELDLIHYFLYPGLWHYLNAFS 520
+W WF + + K +I Y P LW +LN F+
Sbjct: 136 FWIEWFCKSSADKKIFPIIKYTKLPKLWKFLNIFN 170
>U58750-1|AAB00641.1| 307|Caenorhabditis elegans Hypothetical
protein F55G1.7 protein.
Length = 307
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -1
Query: 397 ASFSSGVMSSFRDSEGSSEVIL---WSLKA*FNSASHFVVCTRPRLLHSRI 254
+ F V+S+ + S S EV+L W + N S F+VC R LL+SRI
Sbjct: 37 SKFLLEVLSTLQSS--SDEVLLPLYWKMAENPNVPSRFMVCLRESLLNSRI 85
>U39998-5|AAK71421.2| 408|Caenorhabditis elegans Gustatory receptor
family protein 5 protein.
Length = 408
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 594 LSFFKTNSNNLDGYLLYLEGVVLKKLD---LRSQAVTVLQA 707
+SFF NL G Y++G ++KK++ L S+A+T L +
Sbjct: 225 ISFFNKEIRNLAGTRAYIKGELIKKVETFRLLSEAITELDS 265
>AF039042-11|AAC48251.1| 343|Caenorhabditis elegans Serpentine
receptor, class h protein199 protein.
Length = 343
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 2 SYICSLSYFSLIPTVFIYVLIMDLTKYY 85
S +C S F +IP IYV+I LTKYY
Sbjct: 249 SQVCVPSVFFIIP--LIYVVITILTKYY 274
>AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical
protein Y51H4A.26 protein.
Length = 107
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +3
Query: 348 EPSESLNEDITPEEK--DAYTLAKC--YFDCQEYDRA--AHFLENCTSSK 479
+P E+ N I +++ A KC YFDCQ+Y H + CTS +
Sbjct: 16 QPDENNNGFIQNDDEYLPADLAKKCENYFDCQQYQTCIFGHCVRKCTSER 65
>AF038612-2|AAB92044.1| 507|Caenorhabditis elegans Hypothetical
protein F13B6.2 protein.
Length = 507
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 474 NSCSSLKN---GQLYRILDSRSSILLMCRHPFPPALCPRSE 361
N C S N ++Y I+ +++L++ PF ++C R++
Sbjct: 80 NCCKSQHNIWKSEIYEIIPQSNTVLIIINSPFKLSICERTD 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,512
Number of Sequences: 27780
Number of extensions: 343605
Number of successful extensions: 988
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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