Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c23
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    28   1.6  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   4.8  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.8  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   6.3  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   8.4  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   8.4  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 699 SLENKISVYTKNNSYLAGASNCSEWMFGNQNKLSKN 592
           S   K+ V ++NNSYL G +  +   F N N +S N
Sbjct: 90  SSPGKLPVPSRNNSYLQGTAESNSGNFAN-NSISNN 124


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 81  ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 209
           +ST   + PS+S+S  S S +   +SS  S      SSS+S++
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 84  STRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 209
           S+   S PS+S++  + SP+   +SS  S      SSS+S++
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSS 178


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/47 (23%), Positives = 29/47 (61%)
 Frame = +3

Query: 522  RLIEVSINFARKMIVLIKKSLIVNSWKVYFDYQTSTLSNLRHLPSSY 662
            ++ E+SIN+ + + + +  ++  N  K+Y D +T+  ++ ++L S +
Sbjct: 1450 KIEEISINYFKSVHLNLLTAVFCNMAKLYADAKTNGFASSQYLQSLF 1496


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 87  TRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTS 203
           T   S PS+S+S  S SP+   + S  S      SSS+S
Sbjct: 148 TSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSS 186



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 81  ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 209
           +S+   S PS+S+SK S S     +SS  S      SSS+ ++
Sbjct: 157 SSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSS 199


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +3

Query: 537  SIN-FARKMIVLIKKSLIVNSWKV 605
            S+N ++ ++I+LI+K+LIV  W V
Sbjct: 1425 SVNLYSEEIILLIQKNLIVTKWDV 1448


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 534 VSINFARKMIVL-IKKSLIVNSWKVYFDYQTST 629
           +S N  RK ++L +KKSL+     + +DY+ +T
Sbjct: 545 LSTNVLRKRVLLTLKKSLLNTDLPLIYDYEQAT 577


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 111 TSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADG 230
           T+    S SP+   TS  GS++      S+SA  AI+++G
Sbjct: 370 TNGGGPSDSPSSSSTSVRGSVNDSNSPISSSATFAIQSNG 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,699
Number of Sequences: 5004
Number of extensions: 46758
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)