Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c21
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   0.31 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   2.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.8  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 135 TLSFRNVYGKL*YKYTYKSYN--LFYYSYFI 49
           +LS    Y    YKY Y +YN  L+Y +Y I
Sbjct: 317 SLSNNYNYNNNNYKYNYNNYNKKLYYKNYII 347


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic
          acetylcholine receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 3  PGKKPDIKNKALRDEL*NNYNKI 71
          PG   + + K L D+L +NYN++
Sbjct: 13 PGASANSEAKRLYDDLLSNYNRL 35


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 157 KIRIFIYNTNTFRKILSYNKKPQLCT 234
           K+R  IY T  F  + + N +  LC+
Sbjct: 16  KLRNLIYKTEAFDSLHAGNAEKTLCS 41


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 30 KALRDEL*NNYNKI 71
          K L D+L +NYNK+
Sbjct: 30 KRLYDDLLSNYNKL 43


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 30 KALRDEL*NNYNKI 71
          K L D+L +NYNK+
Sbjct: 30 KRLYDDLLSNYNKL 43


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic
          acetylcholine receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 30 KALRDEL*NNYNKI 71
          K L D+L +NYNK+
Sbjct: 26 KRLYDDLLSNYNKL 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,972
Number of Sequences: 438
Number of extensions: 1815
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)