Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c19
         (760 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    23   3.5  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    23   3.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  

>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +2

Query: 179 DHWFSFVIPYSFLSYTTSIIFEDHVTR 259
           D+W  ++ P  + +YT     +D V++
Sbjct: 342 DYWNEYIPPILYYNYTVDRDLQDEVSQ 368


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +2

Query: 179 DHWFSFVIPYSFLSYTTSIIFEDHVTR 259
           D+W  ++ P  + +YT     +D V++
Sbjct: 342 DYWNEYIPPILYYNYTVDRDLQDEVSQ 368


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 307  KLTTAWMTISNGNVVNSCDVILKYDRCC 224
            K +T W+ +SN   +    V+L  D  C
Sbjct: 1531 KTSTEWIQVSNNVKLGQNFVLLDLDPAC 1558


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = +2

Query: 179 DHWFSFVIPYSFLSYTTSIIFEDHVTRVY 265
           D ++  +  ++  S   ++   DH+TR+Y
Sbjct: 536 DEYYETISNHTDASSAKAVKNSDHITRIY 564


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = +2

Query: 179 DHWFSFVIPYSFLSYTTSIIFEDHVTRVY 265
           D ++  +  ++  S   ++   DH+TR+Y
Sbjct: 536 DEYYETISNHTDASSAKAVKNSDHITRIY 564


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = +2

Query: 179 DHWFSFVIPYSFLSYTTSIIFEDHVTRVY 265
           D ++  +  ++  S   ++   DH+TR+Y
Sbjct: 536 DEYYETISNHTDASSAKAVKNSDHITRIY 564


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = +2

Query: 179 DHWFSFVIPYSFLSYTTSIIFEDHVTRVY 265
           D ++  +  ++  S   ++   DH+TR+Y
Sbjct: 536 DEYYETISNHTDASSAKAVKNSDHITRIY 564


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,500
Number of Sequences: 336
Number of extensions: 3457
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)