Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c19
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.2  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   2.9  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   2.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   3.8  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   8.9  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 61   TLMQHCIAVFVNNLLQFAFYSF*VVIRVYITWL 159
            TL   CI+ F+ N  QFA+  F V  R ++ WL
Sbjct: 1356 TLTALCISPFLYNPHQFAWTDFFVDYREFMRWL 1388


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 148 CTL**QLKMNKMQIVINYLQIQQYNAASMCLIYKIATHYK 29
           C L   L+ NK  ++I YL I+ ++A  MC+ +  + + K
Sbjct: 46  CLLNFSLRENKNYLIIVYLPIEGFSANHMCISHGTSFNIK 85


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/79 (26%), Positives = 38/79 (48%)
 Frame = +3

Query: 234  SYLRITSQEFTTLPLDIVIQAVVSLFAVMWGVLNVAGNLREIPAAAELNAIKWETQNNLP 413
            SY+  + QE  + P ++    ++++F+  W +  V   L  I     L    WE+  N+P
Sbjct: 2078 SYIDRSMQECHSFPHEVYPLGLIAVFS--WPLALVM-LLFAILLIFGLPDYYWESPGNIP 2134

Query: 414  SFYIFNHRGKALSYDYVPT 470
            +FY    R K + + +V T
Sbjct: 2135 AFYTALLRRKLVLWFFVAT 2153


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 46   FYKLDTLMQHCIAVFVNNLLQFAFYSF*VVIRVYITWL 159
            ++ + TL   CI+ F+ N  QF++  F V  R +I WL
Sbjct: 1510 YFWISTLAM-CISPFIFNPHQFSWTDFFVDYREFIRWL 1546


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 61   TLMQHCIAVFVNNLLQFAFYSF*VVIRVYITWL 159
            ++M  C+A F+ N  QF +  F V  R +I WL
Sbjct: 1540 SIMALCVAPFLFNPHQFDWNDFFVDYREFIRWL 1572


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
 Frame = +3

Query: 198 LFHTAFSATQHRSY-LRITSQEFTTL--------PLDIVIQAVVSLFAVMWG 326
           LF+TAF  ++H S   R  ++E ++L         +D +  AVV LFA++ G
Sbjct: 414 LFYTAFMGSEHSSKETRSRAKELSSLIGSYHTDVNIDTMTSAVVKLFALVTG 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,844
Number of Sequences: 5004
Number of extensions: 55015
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)