Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c19
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4892| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)                  29   5.4  
SB_9362| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  
SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   9.5  

>SB_4892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 352 RRLPATFNTPHMTANKLTTAWMTISNGNVVNSCDVILKYDRCCV 221
           R +P  F+   +  N+ +      S GN  + C V+L Y R CV
Sbjct: 112 RTMPEEFSNRVIIVNESSLLQWVNSTGNTTDGCAVVLFYTRFCV 155


>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 343 PATFNTPHMTANKLTTAWMTISNGNVVNSCDV-ILKYD 233
           P+ +NTP  T ++  T W T S   V++ C + I+ +D
Sbjct: 657 PSRYNTPWPTPSRYNTPWSTPSRVTVLDVCAIHIINHD 694



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 343 PATFNTPHMTANKLTTAWMTISNGNVV-NSCDVILKYDRCCVAEKAVWNNERKPMIT 176
           P+ +NTP  T ++  T W T S  N   ++   +   D C +    + N++ KP +T
Sbjct: 647 PSRYNTPWSTPSRYNTPWPTPSRYNTPWSTPSRVTVLDVCAI---HIINHDLKPYVT 700


>SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 876

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -1

Query: 373 SAAAGISRRLPATFNTPHMTANKLTTAWMTISNGNVVNSCDVILKYDR 230
           S   G++   PAT   P    N +T AW+    G + N    I  Y R
Sbjct: 402 SLEIGLTTHNPATLELPATITNLMTGAWVMSGGGMMKNGVTTIETYGR 449


>SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)
          Length = 869

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 271 YHWILSSKLWSVCLLSCG 324
           YHW  S+ +WS CL  CG
Sbjct: 241 YHW--STGIWSACLFDCG 256


>SB_9362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +2

Query: 170 SYCDHW--FSFVIPYSFLSYTTSIIFEDHVTRVYHVTIGYCHPSCGQFVCCHVGSVECGG 343
           S  + W  + FV+  + +   + + F DHV++  H+T        G  + C V S EC  
Sbjct: 144 SLSEEWKRYCFVVDRASIVLKSCMDFYDHVSKKPHIT--------GPMLPCAVFSTECCH 195

Query: 344 *SSRNTSCC*IKCYQMGDTEQSSLI 418
            S +NT        + G T + S +
Sbjct: 196 ASGKNTEMVRFSQEKAGRTARCSRV 220


>SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1846

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -3

Query: 374  FSSSWYFAKITRHIQHSPHDSKQTDH 297
            ++  WY     R I+H+P+++   D+
Sbjct: 1540 YAKEWYVGNFVRRIRHNPYETSSMDY 1565


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,721,979
Number of Sequences: 59808
Number of extensions: 390218
Number of successful extensions: 862
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)