Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c19
         (760 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   3.3  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    24   4.4  
AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    24   5.9  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   7.7  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 355  SRRLPATFNTPHMTANK-LTTAWMTISNGNVVNSCDVILKYDRCCVAEKAVWNNERKPMI 179
            S  L ATF TP    N  + + W+ I NG +V   D +L      + E    NN+++  +
Sbjct: 1364 SSTLKATF-TPTEPKNLWIVSFWVRIGNGEMVPKVDDML---NVLMVELVNLNNQKRVQL 1419

Query: 178  T 176
            T
Sbjct: 1420 T 1420


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 408 LPSFYIFNHRGKALSYDYVPTPTKADLE 491
           LP     +  G+ LS +Y PTPT    E
Sbjct: 355 LPCILRMSRPGRDLSMEYPPTPTSDSSE 382


>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 285 VIQAVVSLFAVMWGVLNVAGNLR 353
           ++ A +SLF+V W + + + N+R
Sbjct: 315 MVSATLSLFSVCWALASFSKNVR 337


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 153 MASFHKVIVIIGFLSLFHTA 212
           M+S+H  +  IG L+L HTA
Sbjct: 651 MSSYHSSMAHIGGLNLSHTA 670


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,060
Number of Sequences: 2352
Number of extensions: 13255
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)