Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c19
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03345.1 68418.m00287 expressed protein                             61   7e-10
At1g03230.1 68414.m00301 extracellular dermal glycoprotein, puta...    28   7.7  

>At5g03345.1 68418.m00287 expressed protein
          Length = 104

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 28/91 (30%), Positives = 49/91 (53%)
 Frame = +3

Query: 171 VIVIIGFLSLFHTAFSATQHRSYLRITSQEFTTLPLDIVIQAVVSLFAVMWGVLNVAGNL 350
           ++ + G L L H A+S  Q+R  L+I  +EF+  P++++++ ++ L   MW  L   G  
Sbjct: 6   LVGVFGVLILSHAAYSTIQYRGLLKIMEEEFSRPPINVILELIIGLALCMWAALTFPGKF 65

Query: 351 REIPAAAELNAIKWETQNNLPSFYIFNHRGK 443
             I   ++ N   +   N+   F IFNHRG+
Sbjct: 66  LSIHPDSDENRAVFLPDNS--DFMIFNHRGR 94


>At1g03230.1 68414.m00301 extracellular dermal glycoprotein,
           putative / EDGP, putative similar to extracellular
           dermal glycoprotein EDGP precursor [Daucus carota]
           GI:285741
          Length = 434

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 266 HVTIGYCHPSCGQFVCCHVGSVECG 340
           +V+  Y  P C   VC   GS+ CG
Sbjct: 77  YVSTTYRSPRCNSAVCSRAGSIACG 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,588
Number of Sequences: 28952
Number of extensions: 268533
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)