Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3c17
(261 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 0.72
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 25 1.7
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 25 1.7
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 2.2
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 24 3.8
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 24 3.8
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 23 5.1
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 23 5.1
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 23 6.7
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 23 6.7
SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|... 23 6.7
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 23 6.7
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 23 8.8
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 23 8.8
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p... 23 8.8
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 23 8.8
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 0.72
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 8 AEAASAFQKLSKGKSSVSFAEFQELFKEYFASEDVNAPGNFVFGKTSF 151
A A A++ L KG+ +S+ + +E F+S VNA + + G F
Sbjct: 311 AALAEAYEYLEKGEYQLSYDKAKESCLGSFSSPSVNARTHNLVGTFKF 358
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.0 bits (52), Expect = 1.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 65 AEFQELFKEYFASEDVNAPGNFVF 136
+EFQ+++K++F D +A +VF
Sbjct: 46 SEFQKIYKQFFPFGDPSAFAEYVF 69
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 1.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 74 QELFKEYFASEDVNAPGNFVFG 139
++LF +F + + PG F FG
Sbjct: 212 EDLFNSFFGDQFFSGPGTFFFG 233
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 2.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 29 QKLSKGKSSVSFAEFQELFKEYFASEDVNAP 121
+++ KGK+S S E ++FKEY + ++ P
Sbjct: 682 ERVMKGKTSPS--EMFKMFKEYLSFDEAGLP 710
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 23.8 bits (49), Expect = 3.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 189 DHN*DHNQFAILQKLVFPKTK 127
DHN D + LVFPKT+
Sbjct: 232 DHNGDIGDYTTAVTLVFPKTE 252
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 23.8 bits (49), Expect = 3.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 195 NTDHN*DHNQFAILQKLV-FPKTKFPGAFTSSEAKYSLNNSWNSAKE 58
N H D ++ +++L+ F KFP S A NNS SA+E
Sbjct: 125 NNRHREDFSRIHDIRELMAFRGYKFPAVDEDSIAVMKPNNSLRSAQE 171
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 23.4 bits (48), Expect = 5.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 108 SSEAKYSLNNSWNSAKETDDLPLDS 34
SS Y+L NS S+ ET +LP S
Sbjct: 300 SSVITYTLINSVTSSSETTNLPSSS 324
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 33 SYPKASHLSPSLNSRNCS 86
SYP++ +L P ++ NCS
Sbjct: 351 SYPESFNLGPYMSDPNCS 368
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 24 LFRSYPKASHLSPSLNSRNCSKNISLLRM*TPLETLSSGRPASEV 158
L S K + PS+NS N +KN L + LE L + E+
Sbjct: 32 LATSVKKPNLKKPSVNSANETKNPKLASLEFQLENLKNDLKRKEL 76
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +2
Query: 29 QKLSKGKSSVSFAEFQELFKEYFASEDVNAPGNFVF 136
++ KG+ + + ++L + + ++ NAPG+FV+
Sbjct: 197 KRFKKGEYTTLESFVKDLNQMFINAKTYNAPGSFVY 232
>SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 23.0 bits (47), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 144 VFPKTKFPGAFTSSEAKYSLNNSWNSAKE 58
V P+TK P T A NN++NS+K+
Sbjct: 30 VDPRTKQPWCPTVRAALPLFNNAFNSSKK 58
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 23.0 bits (47), Expect = 6.7
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +2
Query: 119 PGNFVFGKTSF 151
PGN++FG+T +
Sbjct: 123 PGNYIFGRTEY 133
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 23 AFQKLSKGKSSVSFAEFQELFKEYF 97
AFQ + V + E Q++FKE +
Sbjct: 145 AFQGMFDNAPQVEWEELQDIFKEQY 169
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 115 RPWKLCLREDQLLKYSELI 171
R WK+ ED+L K +E I
Sbjct: 578 RDWKIAQLEDKLAKLTEAI 596
>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 111
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3
Query: 142 LPEDKVSRGVH 110
LPED SRGVH
Sbjct: 66 LPEDHPSRGVH 76
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 13 SCISFSEAIQRQVICLLR*IPGIVQRIFR 99
SC ++S A+ ++ ++ IPG+ R+ R
Sbjct: 393 SCAAYSFAVSCALLFVMNYIPGLSLRVSR 421
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 867,249
Number of Sequences: 5004
Number of extensions: 13654
Number of successful extensions: 51
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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