Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c17
         (261 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157...    27   1.6  
12_01_1074 - 11164802-11164813,11165122-11165172,11165358-111654...    27   2.7  
09_04_0694 - 19529084-19529201,19529464-19529544,19529637-195301...    27   2.7  
06_02_0023 + 10702040-10702364,10702530-10702747,10703643-107041...    26   4.8  
12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272     25   8.4  
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954...    25   8.4  

>04_04_0411 -
           25014511-25015015,25015098-25015169,25015700-25015734,
           25015805-25015873,25015993-25016044,25016444-25016526,
           25016625-25016726,25017150-25017884,25017962-25018012,
           25018792-25018983,25019066-25019216,25020012-25020193,
           25020329-25020532,25020752-25020859
          Length = 846

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 135 KTKFPGAFTSSEAKYSLNNSWNSAKETDDL 46
           + K P   +SS+ K  L +  N AK+TDDL
Sbjct: 332 RVKSPSGPSSSDKKAELPSDDNQAKDTDDL 361


>12_01_1074 -
           11164802-11164813,11165122-11165172,11165358-11165459,
           11165877-11165937,11166276-11168320
          Length = 756

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 41  WIASEKLMQLQPC 3
           W+A+EKL +L+PC
Sbjct: 639 WLAAEKLFELEPC 651


>09_04_0694 -
           19529084-19529201,19529464-19529544,19529637-19530136,
           19530444-19530540,19530633-19530775,19531187-19531528,
           19531810-19532031,19532292-19532330,19532386-19532601,
           19533101-19533196,19533416-19533481,19533777-19533821,
           19533903-19533965,19534274-19534344,19534599-19534699,
           19534896-19534972,19535856-19535900
          Length = 773

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 20  SAFQKLSKGKSSVSFAEFQELFKEYFASEDVNAPGNFVFGKTS 148
           +  Q  SKGK+ +S  +F   FK  + ++  +AP     G  S
Sbjct: 251 AVMQSASKGKAHISAWKFMSYFKSGYTNQRSSAPSEHGSGLLS 293


>06_02_0023 +
           10702040-10702364,10702530-10702747,10703643-10704190,
           10704272-10704523,10704611-10704721,10704812-10704893,
           10704969-10705061,10705146-10705340
          Length = 607

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 109 CERPWKLCLREDQLLKYSELIVILIMICV 195
           CE PW + L  D  L+ SEL + +I + V
Sbjct: 297 CELPWPMRLMHDWYLRASELDLGMITVHV 325


>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
          Length = 786

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 135 KTKFPGAFTSSEAKYSLNNSWNSAKE 58
           KT  PG FT +++  + N +W S  E
Sbjct: 8   KTYLPGYFTMADSSVNSNGNWLSYHE 33


>04_04_0173 -
           23294511-23294601,23294719-23294849,23295160-23295483,
           23296016-23296147,23296225-23296373,23296536-23296670,
           23296997-23297090,23297199-23297318,23298096-23298182,
           23298273-23298386,23299089-23299270,23299960-23300023,
           23300191-23300337,23300636-23300845,23301048-23301217,
           23301355-23301477,23301589-23301661,23301765-23301857
          Length = 812

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 207 QQILNTDHN*DHNQFAILQKLVFPKTK 127
           ++I +TD     + F+ILQ LVFP  K
Sbjct: 126 ERICDTDKVVRESLFSILQSLVFPSLK 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,146,277
Number of Sequences: 37544
Number of extensions: 75784
Number of successful extensions: 206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)