Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c17
         (261 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-1|CAA85340.2|  193|Caenorhabditis elegans Hypothetical pr...    35   0.009
AY962814-1|AAX81435.1|  189|Caenorhabditis elegans calexcitin 2 ...    35   0.009
U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ...    25   7.4  
AF068714-1|AAC17808.1|  254|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z81496-13|CAB04075.1|  365|Caenorhabditis elegans Hypothetical p...    25   9.8  
Z75712-3|CAB00042.2|  223|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AL031627-26|CAA20972.1|  365|Caenorhabditis elegans Hypothetical...    25   9.8  
AF024501-6|AAN65317.1|  321|Caenorhabditis elegans Hypothetical ...    25   9.8  
AF016665-3|AAC71182.3|  330|Caenorhabditis elegans Nuclear hormo...    25   9.8  
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    25   9.8  
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    25   9.8  

>Z36753-1|CAA85340.2|  193|Caenorhabditis elegans Hypothetical
           protein T09A5.1a protein.
          Length = 193

 Score = 34.7 bits (76), Expect = 0.009
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +2

Query: 23  AFQKLSKGKSSVSFAEFQELFKEYFASEDVNAPGNFVFGK 142
           AF    +  +S+   +F  L+K++F SED ++PGN++ GK
Sbjct: 153 AFNHQGQLINSIDKKKFHVLWKQFFHSEDPSSPGNWLLGK 192


>AY962814-1|AAX81435.1|  189|Caenorhabditis elegans calexcitin 2
           protein.
          Length = 189

 Score = 34.7 bits (76), Expect = 0.009
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +2

Query: 23  AFQKLSKGKSSVSFAEFQELFKEYFASEDVNAPGNFVFGK 142
           AF    +  +S+   +F  L+K++F SED ++PGN++ GK
Sbjct: 149 AFNHQGQLINSIDKKKFHVLWKQFFHSEDPSSPGNWLLGK 188


>U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical
           protein K04C2.2 protein.
          Length = 990

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 41  KGKSSVSFAEFQELFKEYFASEDVNAPGNFV 133
           K  S+    EFQ LF+ Y  + +   P NFV
Sbjct: 801 KSMSAGVKTEFQSLFENYLKNVEGKVPSNFV 831


>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
           protein Y113G7C.1 protein.
          Length = 1494

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 32  KLSKGKSSV--SFAEFQELFKEYFASEDVNAP 121
           K S G S V  +F  F  +  ++FA++ ++AP
Sbjct: 900 KFSSGTSGVQTAFKSFSNVLTKFFATQHISAP 931


>AF068714-1|AAC17808.1|  254|Caenorhabditis elegans Hypothetical
           protein B0348.5 protein.
          Length = 254

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 153 QKLVFPKTKFPGAFTSSEAKYSLNNSWNSA 64
           +K   P+T++P  + S++   S N + NSA
Sbjct: 82  RKTKIPQTEYPPDYASNDLMNSFNGATNSA 111


>Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical
           protein F46B3.17 protein.
          Length = 740

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 153 QKLVFPKTKFPGAFTSSEAKYSLNNSWNSAKETDDLPLDS 34
           + +V PK +FP  F  ++A  S N   +    +D  PLDS
Sbjct: 517 EPMVPPKAQFPATFAIAQAVTSEN---SDTSVSDPEPLDS 553


>Z81496-13|CAB04075.1|  365|Caenorhabditis elegans Hypothetical
           protein Y102A5C.1 protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 138 GRPASEV*RTDCDLNYDLCLEFVGLVF 218
           G+P  E  ++ CD+  D C+++V   F
Sbjct: 23  GKPVFEAYKSFCDVIGDSCMDYVDFEF 49


>Z75712-3|CAB00042.2|  223|Caenorhabditis elegans Hypothetical
           protein K04G2.5 protein.
          Length = 223

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 156 LQKLVFPKTKFPGAFTSSEA 97
           L      +TKFPG+FT++ A
Sbjct: 141 LSSFFLQRTKFPGSFTANNA 160


>AL031627-26|CAA20972.1|  365|Caenorhabditis elegans Hypothetical
           protein Y102A5C.1 protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 138 GRPASEV*RTDCDLNYDLCLEFVGLVF 218
           G+P  E  ++ CD+  D C+++V   F
Sbjct: 23  GKPVFEAYKSFCDVIGDSCMDYVDFEF 49


>AF024501-6|AAN65317.1|  321|Caenorhabditis elegans Hypothetical
           protein F39E9.11 protein.
          Length = 321

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 174 HNQFAILQKLVFPKTKFPGAFTSSE 100
           +  F +L   ++PKT+FP   T+ +
Sbjct: 211 YEDFGLLMTTIYPKTEFPSDRTAEK 235


>AF016665-3|AAC71182.3|  330|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 261 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 9   LKLHQLFRSYPKASHLSPSLNSRNCSKNI 95
           L+  ++ + Y K    S S   RNCSKNI
Sbjct: 119 LQNDEILQFYVKEVEKSLSQKKRNCSKNI 147


>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
            pathway homologprotein 1 protein.
          Length = 1451

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 35   LSKGKSSVSFAEFQELFKEYFASEDVNAPGNFVFGK 142
            LSK    VS  E +E++K+ + S       N+V+GK
Sbjct: 1346 LSKRFHKVSIDEAKEVWKQQYDSAANMCQHNYVYGK 1381


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 150 KLVFPKTKFPGAFTSSEAKYSLNNSWNSAKETD 52
           +++F     PG + + +A  +L  SWNS +  +
Sbjct: 135 EIMFESFNVPGLYIAVQAVLALTASWNSREANE 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,669,726
Number of Sequences: 27780
Number of extensions: 72520
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)