Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c13
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    32   0.11 
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    27   2.3  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    27   4.0  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   4.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   5.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   9.2  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   9.2  

>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +3

Query: 186 HFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHF 365
           H + +V D   + KFY E+ GMK++    F E  E + +    +       G        
Sbjct: 14  HTMIRVKDLDKSLKFYTEVFGMKLIDQWVFEEN-EFSLSFLAFDGPGALNHGVERSKREG 72

Query: 366 VVELTYNYGVTHYE 407
           ++ELTYN+G    E
Sbjct: 73  ILELTYNFGTEKKE 86


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 608 AKSIAYWNGLLTLKLYEKTDKTALLGYSDDQAKLELVDIGEP 733
           AK++A W     +     TD T++LG S D      +D+  P
Sbjct: 268 AKTVAKWQAYGFMNGVLNTDNTSILGLSIDYGPFGFLDVYNP 309


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 578 CQSSLASSNLAKSIAYWNGLLTLKLY--EKTDKTALLGYSDDQAKLELVD 721
           C    + S+L  +++Y++  L+ K     KTD   ++GY  D  K +L +
Sbjct: 20  CHHGRSHSDLEWTLSYFHDELSHKFLANRKTDVVGIVGYKCDDTKNDLAE 69


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = -1

Query: 772 RECYAPVCLCAV--YWFTN 722
           R C+A +CLC +  YWF++
Sbjct: 33  RACFALLCLCCITSYWFSS 51


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 596  SSNLAKSIAYWNGLL-TLKLYEKTDKTALLGYS 691
            S  + KSI YW  LL   K Y+K D  +LL Y+
Sbjct: 1414 SDKIIKSITYWQSLLFNSKTYQK-DLFSLLWYA 1445


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 124 SELKS*AQSC*IAKWLAVVLFISYLKSQI 210
           SE+K  +    I+ W++++LF+S+L  ++
Sbjct: 505 SEIKQYSSLILISLWISLILFVSFLNRRL 533


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 178 RPLTILLFNNFELMTLVQN*VI 113
           + L +L+FNN +L TL+QN ++
Sbjct: 131 KQLFLLIFNNGKLRTLLQNAIV 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,690
Number of Sequences: 5004
Number of extensions: 58293
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)