Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c13
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0055 - 7863410-7863530,7864205-7864314,7864341-7864553,786...    83   2e-16
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783...    79   4e-15
08_01_0610 - 5367271-5367312,5367737-5367805,5368208-5368360,536...    68   7e-12
05_03_0054 - 7860359-7860403,7861222-7861362,7861618-7861710           53   2e-07
08_02_0440 + 17192122-17192691,17193947-17194912                       32   0.59 
03_05_0050 + 20285475-20286092,20287481-20287840                       29   4.1  
03_01_0417 - 3197956-3198438,3198550-3200001,3200116-3200277,320...    29   5.5  
02_05_0378 - 28438918-28439064,28439280-28439313,28439859-284399...    29   5.5  
12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451...    28   7.2  
06_01_0144 + 1089090-1091390                                           28   7.2  
05_03_0361 - 12961101-12961201,12961683-12961772,12961910-129619...    28   7.2  

>05_03_0055 -
           7863410-7863530,7864205-7864314,7864341-7864553,
           7865342-7865406,7865511-7865635,7865936-7866164,
           7866270-7866348
          Length = 313

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 53/131 (40%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
 Frame = +3

Query: 177 RALHFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPED 356
           R LH V++V D   T KFY E LGMK+LR  +  E            R++   +GYGPED
Sbjct: 87  RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------ERYTNAFLGYGPED 135

Query: 357 THFVVELTYNYGVTHYEQGNDF--LGITVQ---SSESLKRAQTNN-----WPIKEHNG-L 503
           +HFVVELTYNYGV  Y+ G  F   GI V+    +  L +A+         P+K     +
Sbjct: 136 SHFVVELTYNYGVESYDIGTAFGHFGIAVEDVAKTVDLIKAKGGTVTREPGPVKGGKSVI 195

Query: 504 KYVEAPGGYKF 536
            ++E P GYKF
Sbjct: 196 AFIEDPDGYKF 206


>02_02_0449 -
           10377835-10377876,10377977-10378117,10378230-10378337,
           10378418-10378465,10378568-10378780,10378905-10378969,
           10379092-10379216,10379332-10379524,10379621-10379723
          Length = 345

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 55/139 (39%), Positives = 71/139 (51%), Gaps = 11/139 (7%)
 Frame = +3

Query: 159 SKMVSGRALHFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMV 338
           +K  + R LH V++V D   T KFY E LGMK+LR  +  E            +++   +
Sbjct: 77  AKSDNRRLLHVVYRVGDIDRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFL 125

Query: 339 GYGPEDTHFVVELTYNYGVTHYEQGNDF--LGITVQ---SSESLKRAQTNN-----WPIK 488
           GYG ED HFVVELTYNYGV  Y+ G  F   GI V     +  L RA+         P+K
Sbjct: 126 GYGAEDNHFVVELTYNYGVDKYDIGAGFGHFGIAVDDVAKTVELIRAKGGKVTREPGPVK 185

Query: 489 -EHNGLKYVEAPGGYKFYI 542
                + +VE P GYKF I
Sbjct: 186 GGKTVIAFVEDPDGYKFEI 204



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 32/92 (34%), Positives = 52/92 (56%)
 Frame = +3

Query: 192 VFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHFVV 371
           + +V +      FY +  GM++LR  +         N  Y  +++  M+GYGPED + V+
Sbjct: 218 MLRVGNLDRAISFYEKACGMELLRKRD---------NPEY--KYTVAMMGYGPEDKNAVL 266

Query: 372 ELTYNYGVTHYEQGNDFLGITVQSSESLKRAQ 467
           ELTYNYGVT Y++GN +  I + + +  K A+
Sbjct: 267 ELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAE 298


>08_01_0610 -
           5367271-5367312,5367737-5367805,5368208-5368360,
           5368441-5368548,5368689-5368736,5368868-5369083,
           5369195-5369259,5369478-5369602,5369675-5369793
          Length = 314

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 42/119 (35%), Positives = 58/119 (48%)
 Frame = +3

Query: 177 RALHFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPED 356
           R LH V++V D   T K Y E  GMK+LR  +  E            +++   +G+GPED
Sbjct: 24  RLLHAVYRVGDLDRTIKCYTECFGMKLLRKRDVPE-----------EKYTNAFLGFGPED 72

Query: 357 THFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQTNNWPIKEHNGLKYVEAPGGYK 533
           T+F +ELTYNYGV  Y+ G  F    + + +  K A+     IK     K    PG  K
Sbjct: 73  TNFALELTYNYGVDKYDIGAGFGHFAIATEDVYKLAE----KIKSSCCCKITREPGPVK 127



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 37/111 (33%), Positives = 58/111 (52%)
 Frame = +3

Query: 192 VFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHFVV 371
           + +V D   + KFY + LGMK+LR ++  +            +++  M+GY  ED   V+
Sbjct: 160 MLRVGDLDRSIKFYEKALGMKLLRKKDVPD-----------YKYTIAMLGYADEDKTTVI 208

Query: 372 ELTYNYGVTHYEQGNDFLGITVQSSESLKRAQTNNWPIKEHNGLKYVEAPG 524
           ELTYNYGVT Y +GN +  + + + +  K A+      KE  G K +  PG
Sbjct: 209 ELTYNYGVTEYTKGNAYAQVAIGTEDVYKSAEAVELVTKELGG-KILRQPG 258


>05_03_0054 - 7860359-7860403,7861222-7861362,7861618-7861710
          Length = 92

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 25/63 (39%), Positives = 37/63 (58%)
 Frame = +3

Query: 336 VGYGPEDTHFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQTNNWPIKEHNGLKYVE 515
           +GYGPED + V+ELTYNYGV  Y++GN +  I + + +  K A+     +   NG +   
Sbjct: 1   MGYGPEDKNAVLELTYNYGVKEYDKGNAYAQIAISTDDVYKTAE-----VIRQNGGQITR 55

Query: 516 APG 524
            PG
Sbjct: 56  EPG 58


>08_02_0440 + 17192122-17192691,17193947-17194912
          Length = 511

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 362 MCIFRAISNHGFAPSVC-IRSIASCLASFTKLFMAENLHSE 243
           +C+FR++   G  P+V    S+  CLAS  +L  AE+L  E
Sbjct: 307 LCMFRSMKERGICPTVATYTSVIKCLASCGRLDDAESLLDE 347


>03_05_0050 + 20285475-20286092,20287481-20287840
          Length = 325

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 222 AKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGY 344
           A F   ++G +V+  E   E  +  C+G Y NR    +V Y
Sbjct: 151 ASFAAAVMGFRVVAFEPVLENLQRICDGVYLNRVQDQVVVY 191


>03_01_0417 -
           3197956-3198438,3198550-3200001,3200116-3200277,
           3200351-3201133
          Length = 959

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 315 NRWSKTMVGYGPEDTHFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQT 470
           N WS  +    PED++ +  +      T  E   +FLG+T     +L+  QT
Sbjct: 80  NLWSVRIFSSNPEDSYVLSMMKPPLNDTDEEAKRNFLGLTSVEDRTLQPGQT 131


>02_05_0378 -
           28438918-28439064,28439280-28439313,28439859-28439963,
           28440402-28441558
          Length = 480

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 772 RECYAPVCLCAVYWFTNINKFQFSLI 695
           ++   P+C C   W  N N+ QFSLI
Sbjct: 380 KDSVLPMCHCGTIWGLNENRGQFSLI 405


>12_01_0556 -
           4514686-4514868,4515168-4515290,4515381-4515617,
           4515747-4516358
          Length = 384

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 407 FVMRYTIVVGQFNNKMCIFRAISNHGFAPSVCIRSIASCLASFTKLFMAENLHSEDFPIK 228
           +  +  +VVG  N+ M I   +S+HG   S+ IRS    +     + M   L S   P+K
Sbjct: 169 YAAQRVLVVGCGNSGMEIAYDLSSHGANTSIVIRSPLHVMTK-ELIHMGMKLASWSLPVK 227

Query: 227 F 225
           F
Sbjct: 228 F 228


>06_01_0144 + 1089090-1091390
          Length = 766

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -3

Query: 479 PVVSLRPLQTLT*LYCDAKEIISLFVMRYTIVVGQFNNKMCIFRAISNHGFAPSVCIRSI 300
           PVV   P   +    C    +  L VM  TIV+    N +  F++++N  +A S  I S+
Sbjct: 357 PVVLASPYFFVVNYLCFPVVVFGLCVM--TIVLCGNGNVLYAFKSLTNDNYAVSSGILSL 414

Query: 299 ASCL 288
             CL
Sbjct: 415 TKCL 418


>05_03_0361 -
           12961101-12961201,12961683-12961772,12961910-12961980,
           12962079-12962158,12962264-12962324,12963620-12963681,
           12963826-12963833,12964273-12964609,12964946-12965089,
           12965235-12965339
          Length = 352

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
 Frame = +3

Query: 192 VFKVADRTLTAKFYREILGMKVLRHEEFSE--------GCEAACNGPYANRWSKTMVGYG 347
           +F+V D  ++  FY  ++GM +L+  +F E        G E   + P  +   +T+  +G
Sbjct: 199 MFRVKDPKVSLDFYSRVMGMSLLKRLDFPEMKFSLYFLGYEDVESAP-TDPVKRTVWTFG 257

Query: 348 PEDTHFVVELTYNYG 392
              T   +ELT+N+G
Sbjct: 258 QRAT---LELTHNWG 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,233,494
Number of Sequences: 37544
Number of extensions: 342335
Number of successful extensions: 708
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)