Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c09
         (671 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein...    25   1.6  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   6.6  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   6.6  

>Y17704-1|CAA76824.2|  401|Anopheles gambiae hypothetical protein
           protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +1

Query: 241 DGQVSKEEWISLWEKFSSSPSDWQNLYCKFIFQLEDASNDGSIDSEEFSSVYASF 405
           DG+   + +++L+++   + S+  NL   F+F+L    +D     E  +  Y  F
Sbjct: 52  DGEAILKPYLALYQQCRINASERANLRDNFLFRLNHWHDDHPFLLETVAKAYEPF 106


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 202 KVWDGLSSADTDNDGQVSKEEWIS 273
           KVW+  S  D D DG+   E W++
Sbjct: 287 KVWNSASLIDVDRDGK--DELWLT 308


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 202 KVWDGLSSADTDNDGQVSKEEWIS 273
           KVW+  S  D D DG+   E W++
Sbjct: 287 KVWNSASLIDVDRDGK--DELWLT 308


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,012
Number of Sequences: 2352
Number of extensions: 14576
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)