Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c08
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    27   2.5  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    27   3.2  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    27   4.3  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   9.9  

>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = -2

Query: 335 RGSALDDGYITLLNKYSGCSERPSGGKNINKNRSRLVSRSDSFVPF*LSVMIANDRDR 162
           R +AL   Y +  + +SG S+R + GKNI+++   L S  D  VP  +  +I   R R
Sbjct: 441 RTNALKTLYGSKPHVFSGSSQRRATGKNIHESAIALFSLHD--VPGLMEELIYKSRGR 496


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = -3

Query: 727 IFLIQIWTF*SSFSLAQC----HLVGSKRNYHVTDLADRWRYLHVSLYILFSFYPCTFAG 560
           +++I ++ F S+F++  C    H + S  +  V+   ++  YL + + I+ SF PC    
Sbjct: 123 VYVITVFLF-SAFTMLGCSTFYHTI-SNHSDDVSKFGNKLDYLGIVVMIVGSFIPCLHYA 180

Query: 559 HPTRHSFRKL 530
                +FR L
Sbjct: 181 FACHANFRTL 190


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 485 PDPRAAAVRTVYSVRTHVTDIACVHGD 405
           PD      RT++S+    TDI C+ GD
Sbjct: 198 PDLEPLMSRTIHSLDIGSTDITCISGD 224


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 278 SIRSICSEV*CIRHPEHCHGTHEHNLTVTMCPRVAYW 388
           S+ S+   V C    + C G    N   T+CP V  W
Sbjct: 234 SLSSVVPTVTCNCGKQFCFGCGHDNHQPTICPLVKIW 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,357
Number of Sequences: 5004
Number of extensions: 61087
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)