Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c08
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668...    29   6.0  
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    29   6.0  

>09_04_0687 +
           19465594-19465780,19465994-19466022,19466731-19466803,
           19467237-19467311,19467583-19467644,19467727-19467795,
           19468447-19468475,19468553-19468760,19468867-19469100,
           19469591-19470598
          Length = 657

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 153 PLGSISIICYHHRKSKRNERITSGD*STPVL 245
           PLG +S+  YH  K+  N+++  G  S P++
Sbjct: 455 PLGDLSLPGYHDSKASDNKKVKRGSFSGPIV 485


>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 483 GPSCSCCPHGVQCTY-SRHGHSLCSR 409
           GPSCS C  G+ C++  +  +S CSR
Sbjct: 301 GPSCSICKIGIACSFLIKCKNSTCSR 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,080,419
Number of Sequences: 37544
Number of extensions: 401914
Number of successful extensions: 724
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)