Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c08
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    35   0.082
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z70307-1|CAA94334.1|  205|Caenorhabditis elegans Hypothetical pr...    28   7.1  
L11247-6|AAA28005.2|  367|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF220526-1|AAF43009.1|  332|Caenorhabditis elegans DNAse II homo...    28   7.1  

>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 34.7 bits (76), Expect = 0.082
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 504  LARGAPTGPSCSCCPHGVQCTYSRHGHSLCS 412
            L  GAP   + S CP G +CTY  +G+  CS
Sbjct: 1381 LLNGAPQKCTISRCPAGYECTYRNNGYHCCS 1411


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -1

Query: 513 MTSLARGAPTGPSCSCCPHGVQCT-YSRHGHSLC 415
           +T L+      PS S CP G  C  Y R G S C
Sbjct: 25  LTILSAPVTCNPSISSCPDGYSCQFYERTGSSYC 58


>Z70307-1|CAA94334.1|  205|Caenorhabditis elegans Hypothetical
           protein C39E9.1 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 486 TGPSCSCCPHGVQC 445
           TGP+CS CP G  C
Sbjct: 184 TGPTCSACPTGTTC 197


>L11247-6|AAA28005.2|  367|Caenorhabditis elegans Hypothetical
           protein F09G8.2 protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 679 QCHLVGSKRNYHVTDLADRWRYLHVSLYIL 590
           Q     S    H+T+LA+ W+Y+  + YI+
Sbjct: 148 QSFFCASMEVQHLTELAEHWKYIQATPYII 177


>AF220526-1|AAF43009.1|  332|Caenorhabditis elegans DNAse II homolog
           F09G8.2 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 679 QCHLVGSKRNYHVTDLADRWRYLHVSLYIL 590
           Q     S    H+T+LA+ W+Y+  + YI+
Sbjct: 123 QSFFCASMEVQHLTELAEHWKYIQATPYII 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,484,129
Number of Sequences: 27780
Number of extensions: 358368
Number of successful extensions: 740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)