Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c08
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.21 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.85 
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   3.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 446  VRTHVTDIACVHGDDVFTFPSKPHVDTLSPSSYVREY 336
            VR H TD A +HG  +   P     DT   SS V++Y
Sbjct: 1386 VRPHPTDNAPIHGYTIHYKPEFGDWDTAQISSTVQKY 1422


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 240  VLVNVLPSARTLRASGVFVQKCDVSVIQSTATVLTNIT 353
            + V+     +T+R SG  V     SV+ S+A+ +TN+T
Sbjct: 923  IQVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVTNVT 960


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 421 LVFTVTMCLRSPVSHTWTHCHR 356
           L  T+ MC     SH WT+  R
Sbjct: 14  LTITIVMCQTFTYSHGWTNGKR 35


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 46  NFKCIEVVSTLKK 8
           NF C+EVV  LK+
Sbjct: 230 NFTCLEVVFVLKR 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,638
Number of Sequences: 438
Number of extensions: 4256
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)