Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3c06
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 52 1e-07
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 29 0.91
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.1
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 2.1
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 3.7
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 27 3.7
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.9
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 26 6.4
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 8.5
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 8.5
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 25 8.5
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 25 8.5
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 8.5
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 51.6 bits (118), Expect = 1e-07
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Frame = +3
Query: 252 NGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISM 431
NG + TL+ P V +N++N +++ + + +E S + +I+ G F +G DI
Sbjct: 64 NGARIFTLNRPKV-LNAINVDMIDSILPKLVSLE-ESNLAKVIILKGNGRSFSSGGDIKA 121
Query: 432 ----IENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLETALACKYRIAV 599
I++ K E + ++ + + + +KP +A + G +GGG A+ +RIA
Sbjct: 122 AALSIQDGKLPEVRHAFAQE-YRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIAC 180
Query: 600 KDSKTGFGLPEVMLG 644
+D T F +PE +G
Sbjct: 181 ED--TMFAMPETGIG 193
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 28.7 bits (61), Expect = 0.91
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 231 HTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIE 371
+ CKL V +VT P V +LN + + +S +N +TN I+
Sbjct: 63 YDNCKLSICVPIVTTCIPYHSVENLNFNIRQNISTTLNLEKTNDSIK 109
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = -2
Query: 679 GNLCVPPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPP 554
G PPPP +S T P P+ S RAVSNPP
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSS---------RAVSNPP 389
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/94 (23%), Positives = 42/94 (44%)
Frame = +3
Query: 288 VKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVS 467
V+ + + Q +++ N + + A + I P G S + + T E VS
Sbjct: 534 VRGDDSDVQTGYVLTSTKNPVHATTRFIAQIAILELPSILTTG--YSCVMHIHTAVEEVS 591
Query: 468 LSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLET 569
+K H++ + +S+KP + A +G + LET
Sbjct: 592 FAKLLHKLDKTNRKSKKPPMFATKGMKIIAELET 625
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 530 RNTRQLSRRWIRDCSCM*ISHCCERLQNRIWTTRSHVGTFARRWRDTEITCSHLHTYNF 706
RNT + W SC I C +QNR + +S + ++ +W D + + ++F
Sbjct: 467 RNTFSQDKAWNYLASCEEIQIICLLMQNRNISLKSQI-SYLNKWFDEMVYIYAVRLHSF 524
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 3.7
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = -2
Query: 601 FTAMRYLHARAVSNPPPRQLPCIAAIYGFRDCSILLNISCPLLDRL--TTSSFVLQFSIM 428
+TA+ +H + PPP+ LP I I R CS L + P+L +L T + VL+ M
Sbjct: 254 YTAVPTIHQILLRTPPPKPLPRIRFI---RSCSSPL--APPVLSKLEATFRAPVLEAYAM 308
Query: 427 LISAPAMKHPGLPDIM 380
++ M LP ++
Sbjct: 309 TEASHQMTTNPLPPLV 324
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 664 PPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPRQ 545
P P G S + S P SF + +L + SN P ++
Sbjct: 140 PRPSGNSSRLDRNSSRPFTSSFHSAPFLSSYGSSNDPSQE 179
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 6.4
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 696 VWR*EQVISVSLHRRAKVPT*LLVVQILFWSLSQQCDIYMQEQSLIHLLDSCLVLRQYTV 517
+WR E S S R + + +F S+S CD+Y L++L +SC++ Y V
Sbjct: 294 IWRPEYNFSTSTSLRKREALDGEDIGNVFNSISG-CDLYSLSNFLLYLENSCVI--TYDV 350
Query: 516 SVIVRF 499
S+ F
Sbjct: 351 SLDCSF 356
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 511 DCSILLNISCPLLDRLTTSSFVLQFSIMLISAPAMKHPGLPDIMTA 374
D S LLN +L+ L + ++ L P M+H + D+MTA
Sbjct: 499 DKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTA 544
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 8.5
Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Frame = +3
Query: 129 NSKILSALKILRSRKELFISGVHSRKYAVPASQVHTKCKLVNGVYVVTLDSPNVK-VNSL 305
NS + L L+S + GV +R+ + + + L + V +T + +++ +N L
Sbjct: 384 NSTVYQELLNLKSNNSS-VDGVKTRRQLLEENAL-----LSHKVLKLTEEIQDLETLNQL 437
Query: 306 NTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENC--KTKEEVVSLSKR 479
NT++ S +NE++ + + ++IS +P A ++ ++ C ++EE++ L+ +
Sbjct: 438 NTEIEARQSEKLNEVQEETQRLSQLLISSQP----ALTEVKHLKLCLSDSQEELLQLNAK 493
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 227 STYKMQIGQWSLRSHFGLSK 286
S Y + + +WS+ S+FG SK
Sbjct: 38 SIYSIYVDKWSITSYFGNSK 57
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 8.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -2
Query: 526 IYGFRDCSILLNISCPLL 473
IYG++D ++ + CPL+
Sbjct: 45 IYGYKDLNVTITYECPLM 62
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 673 LCVPPPPGKSPNMTSGSPNPVLESFTAMR 587
L P PP + P +T+ SPN ++ S +R
Sbjct: 240 LTPPAPPVELPPVTTTSPNAIIRSVQWIR 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,354
Number of Sequences: 5004
Number of extensions: 60956
Number of successful extensions: 221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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