Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c03
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522...    28   9.0  

>09_06_0055 - 20550889-20551531,20551612-20551889,20552035-20552203,
            20552397-20552534,20553945-20553997,20554521-20554574,
            20556062-20556295,20556399-20556986,20557065-20557419,
            20557494-20557694,20557925-20557998,20558114-20558254,
            20558611-20558670,20558750-20558806,20559281-20559318,
            20559419-20559578
          Length = 1080

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 220  IHRQLIQWIG-LVEHPRWEKVVD 155
            + R+++QW   LVE  RWE++ D
Sbjct: 964  VKREIVQWAAPLVERRRWERLAD 986


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,710
Number of Sequences: 37544
Number of extensions: 297907
Number of successful extensions: 682
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)