Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3c03
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40802-4|AAK19010.1|   80|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>U40802-4|AAK19010.1|   80|Caenorhabditis elegans Hypothetical
           protein ZC477.4 protein.
          Length = 80

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 85  LCLRTAVLVAWVIASHKNKVASQNRPPSPTLDAQLNQSTELVACES 222
           LC    +L     +S  +  +SQ RPPS +L A L++   +  C S
Sbjct: 3   LCSPLKILPGASSSSSSSTASSQIRPPSLSLSASLSEELRVEECGS 48


>AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical
           protein C16A11.3 protein.
          Length = 726

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +1

Query: 157 RPPSPTLDAQLNQSTELVACESYAVTYFTSGSENVVSPQTFFQVMIVEK*LNET*CRSED 336
           +PP PT   ++ + T  V      + + +  SEN+ SP    +     K   ++ C S+ 
Sbjct: 87  KPPEPTPAPKIERKTTKVLYIQRFLDFLSDKSENIKSPLPLTKFFQDYK--TKSNC-SQS 143

Query: 337 CSKAKLDVIANLF 375
            + AK  ++ANLF
Sbjct: 144 LATAKKKLLANLF 156


>Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical
           protein C25F9.1 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -1

Query: 328 NDIRFHSITFPQS*LEKMFVEKLHSQIRM*SRSQRMIHRQLIQWIGLVEHPRWEKVVDFV 149
           +DI+F +    +S L+K     LHS++      Q M+ + L++  GL E     +V D V
Sbjct: 262 SDIKFSTCLVEKSELKKKIDRLLHSRLEDRLNWQMMLAQNLLRDAGLDELKTEYEVEDLV 321

Query: 148 K 146
           K
Sbjct: 322 K 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,798
Number of Sequences: 27780
Number of extensions: 297823
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)